Non-Coding RNA Search

Ss1.1-Mixc-0043,k11.5

Sequence:


               
               CGGGCCTGCCACCACCTTGCCAAGCTCAGCTCTTCGGGAAGGCTGGCGCTCCCCTCAGGG
GTGCCCTCTCGTGGTCAGGATGAGGAGGCAGCATGAACTGGCCTCTGGGCCCCATGCTCA
GCATCTTGATCTGGGCCTCCTGCCCCACCCATCCCTGAGGTGAGGCCGGGTCCTGAACCA
GCTCTCCCCGCAGCGCTGCCTGGAAGAGGAGTACACAGGGGCACCCCAGCCCTCCGAGGC
AACCCTACAGCCCACCCTGGCAGGTGAGGCCCTGAGCAGACCCCAGAGCGCCCAGCCTCC
TGTCCCCGCCCCACTCCTGTACACGCATCCTGGAAGAGCTGGGCCCCGGGTCTCAGACAG
ACCTCTCCCCCAGAGCTAAAGGAACACAAGGCCGCCATGCAACGGGAGCTGCAGGCACCT
CTGCAGCCTTGCTGGGTCTCCCCCAGCCACAGGTAAACCAGAGCAGACGGGTGGCTGCAC
GGGGCCGGCAAAGGGTCAGGCCACAGCCCCCTCACAGCTCCTCCCTCCTGTTCAGGAGGT
GGCCCTTGGGGTCCTCCAGCCAGGGGCTCAGACCCCTGCCTTGCCTCCATGGGGCTGCTG
AAGTCTCGGCCAGGCCTCTCCAGGGCTGCTGGCCTGCTCCTCCTCTGGAGCGCTGCCCCA
AACCTCGAGGCCCAGCCGCCACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCCTGCCACCACCTTGCCAAGCTCAGCTCTTCGGGAAGGCTGGCGCTCCCCTCAGGG
GTGCCCTCTCGTGGTCAGGATGAGGAGGCAGCATGAACTGGCCTCTGGGCCCCATGCTCA
GCATCTTGATCTGGGCCTCCTGCCCCACCCATCCCTGAGGTGAGGCCGGGTCCTGAACCA
GCTCTCCCCGCAGCGCTGCCTGGAAGAGGAGTACACAGGGGCACCCCAGCCCTCCGAGGC
AACCCTACAGCCCACCCTGGCAGGTGAGGCCCTGAGCAGACCCCAGAGCGCCCAGCCTCC
TGTCCCCGCCCCACTCCTGTACACGCATCCTGGAAGAGCTGGGCCCCGGGTCTCAGACAG
ACCTCTCCCCCAGAGCTAAAGGAACACAAGGCCGCCATGCAACGGGAGCTGCAGGCACCT
CTGCAGCCTTGCTGGGTCTCCCCCAGCCACAGGTAAACCAGAGCAGACGGGTGGCTGCAC
GGGGCCGGCAAAGGGTCAGGCCACAGCCCCCTCACAGCTCCTCCCTCCTGTTCAGGAGGT
GGCCCTTGGGGTCCTCCAGCCAGGGGCTCAGACCCCTGCCTTGCCTCCATGGGGCTGCTG
AAGTCTCGGCCAGGCCTCTCCAGGGCTGCTGGCCTGCTCCTCCTCTGGAGCGCTGCCCCA
AACCTCGAGGCCCAGCCGCCACCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               190-306, - strand, RNAz p=0.786611
               

               
               495-684, - strand, RNAz p=0.997781

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-306, - strand, RNAz p=0.786611
               

               
               495-684, - strand, RNAz p=0.997781

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               246-313, - strand, RNAmicro p=0.953582
               

               
               555-621, + strand, RNAmicro p=0.910496

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               246-313, - strand, RNAmicro p=0.953582
               

               
               555-621, + strand, RNAmicro p=0.910496

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-684, gnl|bosTau2|chr13 (23904758-23905458)
               

               
               3-684, gnl|Hg17|chr1 (44130180-44130836)
               

               
               3-684, gnl|Mm7|chr4 (117246767-117246152)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-684, gnl|bosTau2|chr13 (23904758-23905458)
               

               
               3-684, gnl|Hg17|chr1 (44130180-44130836)
               

               
               3-684, gnl|Mm7|chr4 (117246767-117246152)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	190-306, - strand, RNAz p=0.786611
	495-684, - strand, RNAz p=0.997781

	246-313, - strand, RNAmicro p=0.953582
	555-621, + strand, RNAmicro p=0.910496

	3-684, gnl\|bosTau2\|chr13 (23904758-23905458)
	3-684, gnl\|Hg17\|chr1 (44130180-44130836)
	3-684, gnl\|Mm7\|chr4 (117246767-117246152)