Non-Coding RNA Search

Ss1.1-Mixc-0043,k14.5

Sequence:


               
               GGCCTGGAAGCTACAAGCTGGTGCTTCGGAACCGCAAGGGCTTCGTCAGGCTCGCCCTGC
GGCACGGGGCGGCTCTGGTGCCAATCTTCTCCTTTGGGGAGAATGACGCATTTGACCAGG
TAGAGAACTTACCTGGCTCCTGGCTGCGCTGGTGCCAGGACCGGCTACAGAGGATCATGG
GGATCTCGCTCCCGCTCTTCCACGGCCAGGGCGTCTTCCAGCACAGCTTTGGTTTTCTGC
CCTACCGCCGGCCCATCACCACCGTGGTGGGGACGCCCATCGAGGTGCAGAAGACACCGA
ACCCCTCGCAGGAGGAGGTGGACGGGCTGCACCAGCGCTACCTGAAGGAGCTGTCCAGGC
TCTTTGAAGCCCACAAGCTCAAGTACAACGTCCCCAGCGACCAGCACTTGGAGTTCTGCT
GAGCGCCCGGGGGAGGCACCAGCCCTCCTCAGCACTGGCATTAGGGAGCCCAGAGGGAGG
AGCCGTGGTCCCAGGCGGCTTCCTGGAGGAGGTGTCCGCTGAACACATCCCCAGAGCCTT
CACGGACTGCGGTGCTGATTTCCAGCCCGCGGCCATCCCCGAGTCCCAGCTGGCAGCGTG
CCAGAGGAGGGCATCGGTCCCTTGCCCTCCTGCTGTGAGTCTGGAGCATGAAGCCCACAC
CCTGCTCTGCCCACGTGAGCAATGGGAGAGATGCCGGGAGAGAATGGTGCCTGGGGTCTC
TGTCCTCTGTGGTCCTGTCACTCGGTGGGCAGGAAAAAGAGCAGCTCCAAAGACCAGGTT
TGTTTTCCTCTGACTGAAGCAACAGCACAGAGGAAGCCACCAGCTGCACTGCAGCCCTTT
CTCCTGCAAGCTCCCTCATCCTGCTCACTTCTGTCCCACCCCTCCTCCCTAGCTGGAGAG
GAGGGCGTGGCCATGAAGCCCCTGCACTCGCCCTGGGCGCCTTTGACTCTCTGAGTCCCC
TGAGCCCTGGAGAGGTATCCAGAGGGGCCCGGAACGGGAGAAGGACAACTGGGCTTGTCA
CTGGCTGAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTGGAAGCTACAAGCTGGTGCTTCGGAACCGCAAGGGCTTCGTCAGGCTCGCCCTGC
GGCACGGGGCGGCTCTGGTGCCAATCTTCTCCTTTGGGGAGAATGACGCATTTGACCAGG
TAGAGAACTTACCTGGCTCCTGGCTGCGCTGGTGCCAGGACCGGCTACAGAGGATCATGG
GGATCTCGCTCCCGCTCTTCCACGGCCAGGGCGTCTTCCAGCACAGCTTTGGTTTTCTGC
CCTACCGCCGGCCCATCACCACCGTGGTGGGGACGCCCATCGAGGTGCAGAAGACACCGA
ACCCCTCGCAGGAGGAGGTGGACGGGCTGCACCAGCGCTACCTGAAGGAGCTGTCCAGGC
TCTTTGAAGCCCACAAGCTCAAGTACAACGTCCCCAGCGACCAGCACTTGGAGTTCTGCT
GAGCGCCCGGGGGAGGCACCAGCCCTCCTCAGCACTGGCATTAGGGAGCCCAGAGGGAGG
AGCCGTGGTCCCAGGCGGCTTCCTGGAGGAGGTGTCCGCTGAACACATCCCCAGAGCCTT
CACGGACTGCGGTGCTGATTTCCAGCCCGCGGCCATCCCCGAGTCCCAGCTGGCAGCGTG
CCAGAGGAGGGCATCGGTCCCTTGCCCTCCTGCTGTGAGTCTGGAGCATGAAGCCCACAC
CCTGCTCTGCCCACGTGAGCAATGGGAGAGATGCCGGGAGAGAATGGTGCCTGGGGTCTC
TGTCCTCTGTGGTCCTGTCACTCGGTGGGCAGGAAAAAGAGCAGCTCCAAAGACCAGGTT
TGTTTTCCTCTGACTGAAGCAACAGCACAGAGGAAGCCACCAGCTGCACTGCAGCCCTTT
CTCCTGCAAGCTCCCTCATCCTGCTCACTTCTGTCCCACCCCTCCTCCCTAGCTGGAGAG
GAGGGCGTGGCCATGAAGCCCCTGCACTCGCCCTGGGCGCCTTTGACTCTCTGAGTCCCC
TGAGCCCTGGAGAGGTATCCAGAGGGGCCCGGAACGGGAGAAGGACAACTGGGCTTGTCA
CTGGCTGAATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61857430|ref|XP_597739.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61857430|ref|XP_597739.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               267-386, - strand, RNAz p=0.772248
               

               
               460-579, - strand, RNAz p=0.907283
               

               
               730-965, - strand, RNAz p=0.99901

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-386, - strand, RNAz p=0.772248
               

               
               460-579, - strand, RNAz p=0.907283
               

               
               730-965, - strand, RNAz p=0.99901

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               267-1032, gnl|bosTau2|chr5 (6757215-6756465)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               267-1032, gnl|bosTau2|chr5 (6757215-6756465)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)
               

               
               eje (0.0988338)

	267-386, - strand, RNAz p=0.772248
	460-579, - strand, RNAz p=0.907283
	730-965, - strand, RNAz p=0.99901