Ss1.1-Mixc-0043,k20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGCGCGCCACTCCTTCGTCCAGGCAGGACGTGCGCTCGAGCCCGGCCGAGCAGAGGCC AACGGGAGCCGTGCCAAGCCAAGGCCAGCCGTGCCCAGCGGCTCCGCGGCCCGGGCATCC TCTGCCTTCTCTTCGCTCCCACCGGGAATCGCGCTCCTCGCGCCCACACAGCAGCCCTTG CAGCGCCGGGACCCTCGGGCACCACTGCCGGATAGCGCTTGCTGCCGAGCCAACATGCCC ATCACTCGGATGCGCATGAGACCCTGGCTAGAGATGCAAATTAATTCCAACCAAATCCCA GGGCTGATCTGGATTAATAAAGAGGAGATGATCTTCCAGATCCCATGGAAGCATGCTGCC AAGCATGGCTGGGACATCAACAAGGATGCCTGCCTGTTTCGGAGCTGGGCTATTCACACA GGCCGATACAAAGCAGGGGAAAAGGAGCCGGATCCTAAAACATGGAAGGCCAACTTTCGC TGTGCCATGAACTCCCTGCCAGATATTGAAGAGGTGAAGGACCAGAGCAGGAACAAGGGC AGCTCAGCTGTGCGGGTGTACCGGATGCTCCCACCCCTCACCAAGAACCAGAGGAAAGAG AGAAAGTCCAAGTCCAGCCGAGATGCTAAGTGCAAGGCCAAGAAGAAGTCATGTGGGGAA TCCAGCCCTGATACCTTCTCTGATGGACTCAGCAGCTCCACCCTGCCTGATGACCACAGC AGCTACACAGCTCAGGGATACATCGGGCAGGACTTGGACATTGAACAGGCCCTTACTCCA GCACTGTCACCGTGTGCCATCAGTAGTACTCTCCCTGAGTGGCGCATCCCAGTGGAAATT GTACCAGACAGCACCAGCGACCTGTACAACTTCCAGGTGTCACCCATGCCCTCTACCTCT GAAGCTGCAACAGATGAGGACGAGGAGGGGAAATTAACTGAGGACATCATGAAGCTCCTG GAGCAGTCAGGGTGGCAGCAGACAAACGTGGATGGGAAGGGGTACCTGCTTAATGAACCT GGGGCCCAGCCCACCGCTGTCTATGGAGACTTCAGCTGCAAGGAAGAGCCAGAAGTTGAA AGCCCTGGGGGGTATACTGGGCTGATATCTTCAGATCTGAAGAACGTGGACACCAGCTGG CTGGACAACCTGCTGACCCCAGTCAGGCTGCCCTCCATCCAAGCCATTCCTTGTGCACCG TAGGCGGGCCTTTGGCTCCCTTTTAGTCCTCTAGGTGAGCGGGACCTGGCATCATGGTGG CTGTGGTGCAGAGAAGCAGGACTCCTGTGGCCTCTTGACATGACAAAGTGTGACCCCACT GCTGACCGGGGATGGGGCCAGTTTCCTTGGAACAATGGCCTCTTGGGGCCTGGCAAGCCA GATCTGGACTCATGTTGTGGGGTAAAGCTGGCCTTGTCTCCTGGGAAGATGGGCTTCTGA GAGTGGTGTGTCAGGAAGAGGTCTCAGACAGGAGTCAGCCTCCAGCTCTTCCCTCTGAGC CCAGCTGCCTGGAGACGGTCTTGCTGTCACTGAGCTGGCCCAAGGGAATGGACCATTGAC CTCAGAAAAGCACAGCACCAACCCCAGGGCTGGCTCTGCACTAAGAGACGATTGCACTAA GTGAATCCTGTTCCCAAAGATTCGCCTCCCTTCTTAGCTGAGCCTTGGGGACTGTTCCAA AGCCAGAGAAATGTGAAGGAAGAATGGGGTCCTGTGGGACATGTCCCCTCTGCCTCAGAG GAGCTCTGCCCTGCTCCCTGCTTGGGCTGGGGGGCTTGTGAAAAAACATGGCACTTTTCC TGTGGACGCTGCCACATTTTTGATCAGAGGTGTACACTAATGTTTTCCCCAAGCTCTAGC CTTTGCATTTATTTATACAGTGCCTTGCCCTATACCCACCTGCCCCTTAAGCAGGCCCCA GCAGCCCCTCAGCAGGCCCAGGGAGGCAAGTGTGAGCGCCTTGATGTGACTTTTAAAATT GGAAATGTCATCTGACCACTAAGTCGTGTGCGACCACACATGTATATGTGTGTAAATATG TACATTTGTCTTTTTATAAAAAGTTAACTGTTTATAAGGGGTGTGGCCCTTTATTTAGAA ATAAATTGTAGATGATTTTAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGCGCGCCACTCCTTCGTCCAGGCAGGACGTGCGCTCGAGCCCGGCCGAGCAGAGGCC AACGGGAGCCGTGCCAAGCCAAGGCCAGCCGTGCCCAGCGGCTCCGCGGCCCGGGCATCC TCTGCCTTCTCTTCGCTCCCACCGGGAATCGCGCTCCTCGCGCCCACACAGCAGCCCTTG CAGCGCCGGGACCCTCGGGCACCACTGCCGGATAGCGCTTGCTGCCGAGCCAACATGCCC ATCACTCGGATGCGCATGAGACCCTGGCTAGAGATGCAAATTAATTCCAACCAAATCCCA GGGCTGATCTGGATTAATAAAGAGGAGATGATCTTCCAGATCCCATGGAAGCATGCTGCC AAGCATGGCTGGGACATCAACAAGGATGCCTGCCTGTTTCGGAGCTGGGCTATTCACACA GGCCGATACAAAGCAGGGGAAAAGGAGCCGGATCCTAAAACATGGAAGGCCAACTTTCGC TGTGCCATGAACTCCCTGCCAGATATTGAAGAGGTGAAGGACCAGAGCAGGAACAAGGGC AGCTCAGCTGTGCGGGTGTACCGGATGCTCCCACCCCTCACCAAGAACCAGAGGAAAGAG AGAAAGTCCAAGTCCAGCCGAGATGCTAAGTGCAAGGCCAAGAAGAAGTCATGTGGGGAA TCCAGCCCTGATACCTTCTCTGATGGACTCAGCAGCTCCACCCTGCCTGATGACCACAGC AGCTACACAGCTCAGGGATACATCGGGCAGGACTTGGACATTGAACAGGCCCTTACTCCA GCACTGTCACCGTGTGCCATCAGTAGTACTCTCCCTGAGTGGCGCATCCCAGTGGAAATT GTACCAGACAGCACCAGCGACCTGTACAACTTCCAGGTGTCACCCATGCCCTCTACCTCT GAAGCTGCAACAGATGAGGACGAGGAGGGGAAATTAACTGAGGACATCATGAAGCTCCTG GAGCAGTCAGGGTGGCAGCAGACAAACGTGGATGGGAAGGGGTACCTGCTTAATGAACCT GGGGCCCAGCCCACCGCTGTCTATGGAGACTTCAGCTGCAAGGAAGAGCCAGAAGTTGAA AGCCCTGGGGGGTATACTGGGCTGATATCTTCAGATCTGAAGAACGTGGACACCAGCTGG CTGGACAACCTGCTGACCCCAGTCAGGCTGCCCTCCATCCAAGCCATTCCTTGTGCACCG TAGGCGGGCCTTTGGCTCCCTTTTAGTCCTCTAGGTGAGCGGGACCTGGCATCATGGTGG CTGTGGTGCAGAGAAGCAGGACTCCTGTGGCCTCTTGACATGACAAAGTGTGACCCCACT GCTGACCGGGGATGGGGCCAGTTTCCTTGGAACAATGGCCTCTTGGGGCCTGGCAAGCCA GATCTGGACTCATGTTGTGGGGTAAAGCTGGCCTTGTCTCCTGGGAAGATGGGCTTCTGA GAGTGGTGTGTCAGGAAGAGGTCTCAGACAGGAGTCAGCCTCCAGCTCTTCCCTCTGAGC CCAGCTGCCTGGAGACGGTCTTGCTGTCACTGAGCTGGCCCAAGGGAATGGACCATTGAC CTCAGAAAAGCACAGCACCAACCCCAGGGCTGGCTCTGCACTAAGAGACGATTGCACTAA GTGAATCCTGTTCCCAAAGATTCGCCTCCCTTCTTAGCTGAGCCTTGGGGACTGTTCCAA AGCCAGAGAAATGTGAAGGAAGAATGGGGTCCTGTGGGACATGTCCCCTCTGCCTCAGAG GAGCTCTGCCCTGCTCCCTGCTTGGGCTGGGGGGCTTGTGAAAAAACATGGCACTTTTCC TGTGGACGCTGCCACATTTTTGATCAGAGGTGTACACTAATGTTTTCCCCAAGCTCTAGC CTTTGCATTTATTTATACAGTGCCTTGCCCTATACCCACCTGCCCCTTAAGCAGGCCCCA GCAGCCCCTCAGCAGGCCCAGGGAGGCAAGTGTGAGCGCCTTGATGTGACTTTTAAAATT GGAAATGTCATCTGACCACTAAGTCGTGTGCGACCACACATGTATATGTGTGTAAATATG TACATTTGTCTTTTTATAAAAAGTTAACTGTTTATAAGGGGTGTGGCCCTTTATTTAGAA ATAAATTGTAGATGATTTTAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1090-1187, - strand, RNAz p=0.995886 | |
| 1619-1963, - strand, RNAz p=0.796949 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1090-1187, - strand, RNAz p=0.995886 | |
| 1619-1963, - strand, RNAz p=0.796949 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-229, gnl|bosTau2|chr7 (21075618-21075396) | |
| 1-229, gnl|Hg17|chr5 (131854364-131854136) | |
| 1-229, gnl|Mm7|chr11 (53726808-53727035) | |
| 420-598, gnl|bosTau2|chr7 (21072096-21071918) | |
| 420-598, gnl|canFam2|chr11 (23782241-23782426) | |
| 420-598, gnl|danRer3|chr9 (791593-791773) | |
| 420-598, gnl|echTel1|scaffold_293585 (37487-37672) | |
| 420-598, gnl|fr1|chrUn (291577064-291576913) | |
| 420-598, gnl|galGal2|chr13 (15912745-15912934) | |
| 420-598, gnl|hg17|chr5 (131850543-131850728) | |
| 420-598, gnl|Hg17|chr5 (131850723-131850545) | |
| 420-598, gnl|loxAfr1|scaffold_12238 (41940-41755) | |
| 420-598, gnl|mm7|chr11 (53730593-53730408) | |
| 420-598, gnl|Mm7|chr11 (53730411-53730589) | |
| 420-598, gnl|monDom2|scaffold_6 (93197315-93197500) | |
| 420-598, gnl|oryCun1|scaffold_203441 (99413-99598) | |
| 420-598, gnl|panTro1|chr4 (138183547-138183732) | |
| 420-598, gnl|rheMac2|chr6 (128898087-128898272) | |
| 420-598, gnl|rn3|chr10 (39233439-39233259) | |
| 420-598, gnl|tetNig1|chr7 (8368290-8368137) | |
| 420-598, gnl|xenTro1|scaffold_292 (327980-328165) | |
| 647-781, gnl|bosTau2|chr7 (21071639-21071505) | |
| 647-781, gnl|canFam2|chr11 (23781839-23782107) | |
| 647-781, gnl|dasNov1|scaffold_9449 (19724-19978) | |
| 647-781, gnl|echTel1|scaffold_293585 (37086-37353) | |
| 647-781, gnl|galGal2|chr13 (15912185-15912585) | |
| 647-781, gnl|hg17|chr5 (131850139-131850405) | |
| 647-781, gnl|Hg17|chr5 (131850279-131850148) | |
| 647-781, gnl|loxAfr1|scaffold_12238 (42348-42081) | |
| 647-781, gnl|mm7|chr11 (53730962-53730715) | |
| 647-781, gnl|Mm7|chr11 (53730817-53730951) | |
| 647-781, gnl|monDom2|scaffold_6 (93196916-93197172) | |
| 647-781, gnl|oryCun1|scaffold_203441 (99019-99281) | |
| 647-781, gnl|panTro1|chr4 (138183120-138183386) | |
| 647-781, gnl|rheMac2|chr6 (128897681-128897947) | |
| 647-781, gnl|rn3|chr10 (39233720-39233473) | |
| 1090-2120, gnl|bosTau2|chr7 (21069712-21068682) | |
| 1090-2120, gnl|Hg17|chr5 (131847667-131846628) | |
| 1090-2120, gnl|Mm7|chr11 (53733069-53734119) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-229, gnl|bosTau2|chr7 (21075618-21075396) | |
| 1-229, gnl|Hg17|chr5 (131854364-131854136) | |
| 1-229, gnl|Mm7|chr11 (53726808-53727035) | |
| 420-598, gnl|bosTau2|chr7 (21072096-21071918) | |
| 420-598, gnl|canFam2|chr11 (23782241-23782426) | |
| 420-598, gnl|danRer3|chr9 (791593-791773) | |
| 420-598, gnl|echTel1|scaffold_293585 (37487-37672) | |
| 420-598, gnl|fr1|chrUn (291577064-291576913) | |
| 420-598, gnl|galGal2|chr13 (15912745-15912934) | |
| 420-598, gnl|hg17|chr5 (131850543-131850728) | |
| 420-598, gnl|Hg17|chr5 (131850723-131850545) | |
| 420-598, gnl|loxAfr1|scaffold_12238 (41940-41755) | |
| 420-598, gnl|mm7|chr11 (53730593-53730408) | |
| 420-598, gnl|Mm7|chr11 (53730411-53730589) | |
| 420-598, gnl|monDom2|scaffold_6 (93197315-93197500) | |
| 420-598, gnl|oryCun1|scaffold_203441 (99413-99598) | |
| 420-598, gnl|panTro1|chr4 (138183547-138183732) | |
| 420-598, gnl|rheMac2|chr6 (128898087-128898272) | |
| 420-598, gnl|rn3|chr10 (39233439-39233259) | |
| 420-598, gnl|tetNig1|chr7 (8368290-8368137) | |
| 420-598, gnl|xenTro1|scaffold_292 (327980-328165) | |
| 647-781, gnl|bosTau2|chr7 (21071639-21071505) | |
| 647-781, gnl|canFam2|chr11 (23781839-23782107) | |
| 647-781, gnl|dasNov1|scaffold_9449 (19724-19978) | |
| 647-781, gnl|echTel1|scaffold_293585 (37086-37353) | |
| 647-781, gnl|galGal2|chr13 (15912185-15912585) | |
| 647-781, gnl|hg17|chr5 (131850139-131850405) | |
| 647-781, gnl|Hg17|chr5 (131850279-131850148) | |
| 647-781, gnl|loxAfr1|scaffold_12238 (42348-42081) | |
| 647-781, gnl|mm7|chr11 (53730962-53730715) | |
| 647-781, gnl|Mm7|chr11 (53730817-53730951) | |
| 647-781, gnl|monDom2|scaffold_6 (93196916-93197172) | |
| 647-781, gnl|oryCun1|scaffold_203441 (99019-99281) | |
| 647-781, gnl|panTro1|chr4 (138183120-138183386) | |
| 647-781, gnl|rheMac2|chr6 (128897681-128897947) | |
| 647-781, gnl|rn3|chr10 (39233720-39233473) | |
| 1090-2120, gnl|bosTau2|chr7 (21069712-21068682) | |
| 1090-2120, gnl|Hg17|chr5 (131847667-131846628) | |
| 1090-2120, gnl|Mm7|chr11 (53733069-53734119) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| jej (0.692452) | |
| col (0.390016) | |
| ill (0.351185) | |
| cje (0.330469) | |
| cag (0.302389) | |
| pty (0.285429) | |
| cly (0.241284) | |
| fty (0.17584) | |
| ton (0.1755) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| cli (0.152812) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.692452) | |
| col (0.390016) | |
| ill (0.351185) | |
| cje (0.330469) | |
| cag (0.302389) | |
| pty (0.285429) | |
| cly (0.241284) | |
| fty (0.17584) | |
| ton (0.1755) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| cli (0.152812) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |