Non-Coding RNA Search

Ss1.1-Mixc-0043,o12.5.5

Sequence:


               
               GTGCCCATCTCGGGCTGGCACGGCGACAACATGCTGGAGCCCTCCCCCAACATGCCCTGG
TTCAAGGGCTGGAAAGTGGAGCGGAAGGAAGGGAATGCCAGTGGCGTGTCCCTGCTGGAG
GCTCTGGACACCATCCTGCCCCCCACACGCCCCACAGACAAGCCCCTGCGCCTGCCGCTG
CAGGACGTGTACAAGATTGGCGGCATTGGCACTGTGCCTGTGGGCCGAGTGGAGACGGGC
ATCCTCCGGCCGGGCATGGTGGTGACCTTCGCGCCCGTGAACATCACCACTGAGGTGAAG
TCGGTGGAGATGCACCACGAGGCTCTGAGCGAGGCCCTGCCCGGGGACAACGTCGGCTTC
AACGTGAAGAACGTGTCAGTCAAGGACATCCGTCGGGGCAACGTGTGTGGGGACAGCAAG
TCCGACCCGCCCCAGGAGGCCGCCCAGTTCACTTCCCAGGTCATCATTCTGAACCACCCG
GGGCAGATCAGCGCCGGCTACTCACCGGTCATTGACTGCCACACGGCCCACATCGCCTGC
AAGTTTGCCGAGCTCAAGGAGAAGATTGACCGGCGCTCTGGCAAGAAGCTGGAGGACAAC
CCCAAGTCCCTGAAGTCTGGCGACGCGGCCATTGTAGAGATGGTCCCTGGGAAGCCCATG
TGTGTGGAGAGCTTCTCCCAGTACCCGCCCCTCGGCCGCTTCGCCGTGCGCGACATGAGG
CAGACGGTGGCCGTGGGCGTCATCAAGAACGTGGAGAAGAAGAGCGGCGGCGCCGGCAAG
GTCACCAAGTCGGCGCAGAAGGCGCAGAAGGCGGGCAAGTGAAGCGCGGGCGCCCGCGGC
GCGACCCTCCCCGGCGGCGCCGCGCCCCGCCCTCGGCCCCGCCCCCGGCCCCGCCCCCGG
CGCGGCCCCGGCGCCCCGCCCCCCCGCCAGGCGCATGTCTGTACCTCCGCTTGTAAGAGG
CTCTCCGTCAGCGACTGGATGCTGGCCATCAAGGTCCAGTGGAAGTTCTTTAAGAGGAAA
AGCGCCCCCGCCGCCCCGGCTTCCGCGTCCAGCCTTCGCCACGCTCAGTGTCCGTTTTAC
CAATAAACTGAGCGACCCCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCCCATCTCGGGCTGGCACGGCGACAACATGCTGGAGCCCTCCCCCAACATGCCCTGG
TTCAAGGGCTGGAAAGTGGAGCGGAAGGAAGGGAATGCCAGTGGCGTGTCCCTGCTGGAG
GCTCTGGACACCATCCTGCCCCCCACACGCCCCACAGACAAGCCCCTGCGCCTGCCGCTG
CAGGACGTGTACAAGATTGGCGGCATTGGCACTGTGCCTGTGGGCCGAGTGGAGACGGGC
ATCCTCCGGCCGGGCATGGTGGTGACCTTCGCGCCCGTGAACATCACCACTGAGGTGAAG
TCGGTGGAGATGCACCACGAGGCTCTGAGCGAGGCCCTGCCCGGGGACAACGTCGGCTTC
AACGTGAAGAACGTGTCAGTCAAGGACATCCGTCGGGGCAACGTGTGTGGGGACAGCAAG
TCCGACCCGCCCCAGGAGGCCGCCCAGTTCACTTCCCAGGTCATCATTCTGAACCACCCG
GGGCAGATCAGCGCCGGCTACTCACCGGTCATTGACTGCCACACGGCCCACATCGCCTGC
AAGTTTGCCGAGCTCAAGGAGAAGATTGACCGGCGCTCTGGCAAGAAGCTGGAGGACAAC
CCCAAGTCCCTGAAGTCTGGCGACGCGGCCATTGTAGAGATGGTCCCTGGGAAGCCCATG
TGTGTGGAGAGCTTCTCCCAGTACCCGCCCCTCGGCCGCTTCGCCGTGCGCGACATGAGG
CAGACGGTGGCCGTGGGCGTCATCAAGAACGTGGAGAAGAAGAGCGGCGGCGCCGGCAAG
GTCACCAAGTCGGCGCAGAAGGCGCAGAAGGCGGGCAAGTGAAGCGCGGGCGCCCGCGGC
GCGACCCTCCCCGGCGGCGCCGCGCCCCGCCCTCGGCCCCGCCCCCGGCCCCGCCCCCGG
CGCGGCCCCGGCGCCCCGCCCCCCCGCCAGGCGCATGTCTGTACCTCCGCTTGTAAGAGG
CTCTCCGTCAGCGACTGGATGCTGGCCATCAAGGTCCAGTGGAAGTTCTTTAAGAGGAAA
AGCGCCCCCGCCGCCCCGGCTTCCGCGTCCAGCCTTCGCCACGCTCAGTGTCCGTTTTAC
CAATAAACTGAGCGACCCCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15680095|gb|AAH14377.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15680095|gb|AAH14377.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.5632

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.5632

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-247, gnl|bosTau2|chr10 (14623566-14623323)
               

               
               1-247, gnl|Hg17|chr7 (22324289-22324015)
               

               
               1-247, gnl|Mm7|chr2 (40563608-40563882)
               


               
               274-810, gnl|bosTau2|chr10 (14623324-14622812)
               

               
               274-810, gnl|Hg17|chr7 (22324044-22323480)
               

               
               274-810, gnl|Mm7|chr2 (40563853-40564418)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-247, gnl|bosTau2|chr10 (14623566-14623323)
               

               
               1-247, gnl|Hg17|chr7 (22324289-22324015)
               

               
               1-247, gnl|Mm7|chr2 (40563608-40563882)
               


               
               274-810, gnl|bosTau2|chr10 (14623324-14622812)
               

               
               274-810, gnl|Hg17|chr7 (22324044-22323480)
               

               
               274-810, gnl|Mm7|chr2 (40563853-40564418)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               ebs (1.06471)
               

               
               fcc (0.593354)
               

               
               hyp (0.571347)
               

               
               ecc (0.46014)
               

               
               ece (0.45861)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ssp (0.13552)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (1.06471)
               

               
               fcc (0.593354)
               

               
               hyp (0.571347)
               

               
               ecc (0.46014)
               

               
               ece (0.45861)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ssp (0.13552)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

	1-247, gnl\|bosTau2\|chr10 (14623566-14623323)
	1-247, gnl\|Hg17\|chr7 (22324289-22324015)
	1-247, gnl\|Mm7\|chr2 (40563608-40563882)

	274-810, gnl\|bosTau2\|chr10 (14623324-14622812)
	274-810, gnl\|Hg17\|chr7 (22324044-22323480)
	274-810, gnl\|Mm7\|chr2 (40563853-40564418)

	ebs (1.06471)
	fcc (0.593354)
	hyp (0.571347)
	ecc (0.46014)
	ece (0.45861)
	hlv (0.278513)
	fce (0.271592)
	nms (0.213858)
	mas (0.210305)
	fbs (0.175346)
	fhi (0.169578)
	ssp (0.13552)
	cbr (0.127975)
	ese (0.126502)
	jca (0.11396)