Non-Coding RNA Search

Ss1.1-Mixc-0044,f03.5

Sequence:


               
               GGCGAGAGGCTAGGAGGTCTACAAATACCGTCTGGGTAGCTGGTGTGAGTACAGAGGGTA
CTGGGGGGGCTTAGCCCCCAAGGAAGAGGACCAGTCCTCCCCCAGCACCACCATCAAGAC
CCCAGGGGCTCCCTCTTTTCTCCACAGACTGTGGACTGACTTAGGGAATCCCAAACGATG
ACAGAAAAGGAGGTGCTGGAGTCCCATAAGCCCTCCTTCCCAGGAGAGACTCGGCAAAGT
GGGCTACAGCGGCTGAAGCAGTTATTTAGGAAGGAGTCTACAGGGACAAAGGAGATGGAG
CTTCCCCCAGAGCCCCAGGCCAATGGGGAGGCAGTGGGAGCTGGGGGTGGGCCCATCTAC
TACATCTATGAGGAAGAGGAAGAAGAGGAGGAAGAGGAAGAAGAACCACCCCCAGAACCT
CCCAAGCTTGTCAATGATAAGCCCCACAAATTCAAAGATCACTTCTTCAAGAAGCCCAAG
TTCTGTGACGTCTGCGCCCGGATGATTGTGCTCAACAACAAATTTGGGCTTCGCTGTAAG
AACTGCAAAACTAACATCCACGAACACTGTCAGTCCTACGTGGAGATGCAGAGATGCTTC
GGCAAGATCCCCCCTGGTTTCCGTCGGGCCTATAGCTCCCCACTCTACAGCAACCAGCAG
TACGCTTGGTGTCAAGATCTCTCTGCTGCCNATCGCAATGACCCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGAGAGGCTAGGAGGTCTACAAATACCGTCTGGGTAGCTGGTGTGAGTACAGAGGGTA
CTGGGGGGGCTTAGCCCCCAAGGAAGAGGACCAGTCCTCCCCCAGCACCACCATCAAGAC
CCCAGGGGCTCCCTCTTTTCTCCACAGACTGTGGACTGACTTAGGGAATCCCAAACGATG
ACAGAAAAGGAGGTGCTGGAGTCCCATAAGCCCTCCTTCCCAGGAGAGACTCGGCAAAGT
GGGCTACAGCGGCTGAAGCAGTTATTTAGGAAGGAGTCTACAGGGACAAAGGAGATGGAG
CTTCCCCCAGAGCCCCAGGCCAATGGGGAGGCAGTGGGAGCTGGGGGTGGGCCCATCTAC
TACATCTATGAGGAAGAGGAAGAAGAGGAGGAAGAGGAAGAAGAACCACCCCCAGAACCT
CCCAAGCTTGTCAATGATAAGCCCCACAAATTCAAAGATCACTTCTTCAAGAAGCCCAAG
TTCTGTGACGTCTGCGCCCGGATGATTGTGCTCAACAACAAATTTGGGCTTCGCTGTAAG
AACTGCAAAACTAACATCCACGAACACTGTCAGTCCTACGTGGAGATGCAGAGATGCTTC
GGCAAGATCCCCCCTGGTTTCCGTCGGGCCTATAGCTCCCCACTCTACAGCAACCAGCAG
TACGCTTGGTGTCAAGATCTCTCTGCTGCCNATCGCAATGACCCTGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55638305|ref|XP_509158.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55638305|ref|XP_509158.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-177, - strand, RNAz p=0.984438
               

               
               15-123, - strand, RNAz p=0.995498
               

               
               243-481, + strand, RNAz p=0.997695

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-177, - strand, RNAz p=0.984438
               

               
               15-123, - strand, RNAz p=0.995498
               

               
               243-481, + strand, RNAz p=0.997695

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-177, gnl|bosTau2|chr5 (32440092-32440269)
               

               
               1-177, gnl|canFam2|chr10 (4360554-4361013)
               

               
               1-177, gnl|dasNov1|scaffold_79268 (3083-3536)
               

               
               1-177, gnl|echTel1|scaffold_293619 (7646-7268)
               

               
               1-177, gnl|hg17|chr12 (55930991-55931446)
               

               
               1-177, gnl|Hg17|chr12 (55931217-55931042)
               

               
               1-177, gnl|loxAfr1|scaffold_63195 (1234-775)
               

               
               1-177, gnl|mm7|chr10 (127003333-127002914)
               

               
               1-177, gnl|Mm7|chr10 (127003125-127003299)
               

               
               1-177, gnl|oryCun1|scaffold_200231 (46590-47028)
               

               
               1-177, gnl|panTro1|chr10_random (22718247-22717794)
               

               
               1-177, gnl|rheMac2|chr11 (54320022-54320475)
               

               
               1-177, gnl|rn3|chr7 (67499476-67499082)
               


               
               243-511, gnl|bosTau2|chr5 (32441309-32441577)
               

               
               243-511, gnl|Hg17|chr12 (55929359-55929091)
               

               
               243-511, gnl|Mm7|chr10 (127004478-127004743)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-177, gnl|bosTau2|chr5 (32440092-32440269)
               

               
               1-177, gnl|canFam2|chr10 (4360554-4361013)
               

               
               1-177, gnl|dasNov1|scaffold_79268 (3083-3536)
               

               
               1-177, gnl|echTel1|scaffold_293619 (7646-7268)
               

               
               1-177, gnl|hg17|chr12 (55930991-55931446)
               

               
               1-177, gnl|Hg17|chr12 (55931217-55931042)
               

               
               1-177, gnl|loxAfr1|scaffold_63195 (1234-775)
               

               
               1-177, gnl|mm7|chr10 (127003333-127002914)
               

               
               1-177, gnl|Mm7|chr10 (127003125-127003299)
               

               
               1-177, gnl|oryCun1|scaffold_200231 (46590-47028)
               

               
               1-177, gnl|panTro1|chr10_random (22718247-22717794)
               

               
               1-177, gnl|rheMac2|chr11 (54320022-54320475)
               

               
               1-177, gnl|rn3|chr7 (67499476-67499082)
               


               
               243-511, gnl|bosTau2|chr5 (32441309-32441577)
               

               
               243-511, gnl|Hg17|chr12 (55929359-55929091)
               

               
               243-511, gnl|Mm7|chr10 (127004478-127004743)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-177, - strand, RNAz p=0.984438
	15-123, - strand, RNAz p=0.995498
	243-481, + strand, RNAz p=0.997695

	1-177, gnl\|bosTau2\|chr5 (32440092-32440269)
	1-177, gnl\|canFam2\|chr10 (4360554-4361013)
	1-177, gnl\|dasNov1\|scaffold_79268 (3083-3536)
	1-177, gnl\|echTel1\|scaffold_293619 (7646-7268)
	1-177, gnl\|hg17\|chr12 (55930991-55931446)
	1-177, gnl\|Hg17\|chr12 (55931217-55931042)
	1-177, gnl\|loxAfr1\|scaffold_63195 (1234-775)
	1-177, gnl\|mm7\|chr10 (127003333-127002914)
	1-177, gnl\|Mm7\|chr10 (127003125-127003299)
	1-177, gnl\|oryCun1\|scaffold_200231 (46590-47028)
	1-177, gnl\|panTro1\|chr10_random (22718247-22717794)
	1-177, gnl\|rheMac2\|chr11 (54320022-54320475)
	1-177, gnl\|rn3\|chr7 (67499476-67499082)

	243-511, gnl\|bosTau2\|chr5 (32441309-32441577)
	243-511, gnl\|Hg17\|chr12 (55929359-55929091)
	243-511, gnl\|Mm7\|chr10 (127004478-127004743)