Non-Coding RNA Search

Ss1.1-Mixc-0044,g18.5.5

Sequence:


               
               TTAGAAGTTCCAGGTAGCGCTGAGAGGGATGCTTCCAGCGCTCCCCTATCCCCTACTCCC
CCCAACCTCGCTTCACGCCCTTCCAGATGAGCCTGTGTCACTCCCAGGCACTGCCAAGCA
AGCCCGGGAAAAGCAGGTCCCTGGCCATCAGCTAGAATTGGGATGGAGAAGTTCTCAGAA
ACTTCCCCTCTTCCAGGAACATACAGAATCAGCTTAGGTCGTGGACATGGTTAGAAGCTC
TGGACAATAAGAGGGAAAGAGGCGTTCCCGTCATGACTCAGTGGTTAACAAATCCAACTA
GTATCCGTGAGGATGAGGGTTCGATCCCTGGCCTCGCTCAGTGGGTTAAGGATCCGGTGT
TGCCGTGAGCTGTGGTGTAGGTCGCAGATGCAGCTGAGATCCCACGTTGCTGTGGTTGTG
CCATAGGCCGGCAGCTGTAGCTCCAATTCAGCCCCTAGCCTGGGAACCTCCATATGCCAC
AAATGCAGCCCACAAAAGACAGAAATAATAATAATAACAATAAGAAGAAGGAAAGCATTA
GGAGACCTGCCCTTGACCTCTCAGAGGGCAGGGCTGTTCCTCCCAAGCAAACACCCTTCC
CGATAATGATCACAGTGCCCACTTCCCCTGAGGTTCCTGCAGGAAGATGTTTTTCCTTCC
AGAGCTCGCTCCCCATCTGCACCTTGCTCTGCAGGCAGCTCTGCCCATTCTCTAAGCCCG
GCTTAGAAGGCGTTGGGACTGTCCTGTAGCAAGACACCTAGATGAACCAAGCAAGGGAGA
GGGACCCCTAAGGAAAATGGAAGACCGAAGGGAGAAAGGAAGGAAGCACAAAAGACAAAC
ATCAGGCCCCTAAACAACCTCCCAAGGGCTCTTACTTCATTGCACTGGAATTCTGCTTTA
TCAGAAGTGCCTTGAAATAATGCGTCGTTGCCTTGGGCTTGGAAAACGAAATGGGAAACC
ATTTTACATGGGGCCCGATTCATTTGAGATTTATTGACCGTGAACAAAAGTTTATCTTTA
CACAATCAATAAAAATGGCATTTGTTTAGTAAATTAAGAGTATCAACAATATTGCTAGGG
GTGGCATATGTAGTCTCTTAAATGATACTTTTTGGGCACTTTAGGACTATCCATTTAGAA
ATAGTGAATGCATGGGCTAGTTATCATCAGTTCTTATGTATTTGTTAGATAAACATCTGC
AAGGCCTTTACTTGGCGACCTTTTGTAAGACATTAGTCTGAGACACTATGTATGTACTTG
AAAATAATAAAGTTGCATTTCTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGAAGTTCCAGGTAGCGCTGAGAGGGATGCTTCCAGCGCTCCCCTATCCCCTACTCCC
CCCAACCTCGCTTCACGCCCTTCCAGATGAGCCTGTGTCACTCCCAGGCACTGCCAAGCA
AGCCCGGGAAAAGCAGGTCCCTGGCCATCAGCTAGAATTGGGATGGAGAAGTTCTCAGAA
ACTTCCCCTCTTCCAGGAACATACAGAATCAGCTTAGGTCGTGGACATGGTTAGAAGCTC
TGGACAATAAGAGGGAAAGAGGCGTTCCCGTCATGACTCAGTGGTTAACAAATCCAACTA
GTATCCGTGAGGATGAGGGTTCGATCCCTGGCCTCGCTCAGTGGGTTAAGGATCCGGTGT
TGCCGTGAGCTGTGGTGTAGGTCGCAGATGCAGCTGAGATCCCACGTTGCTGTGGTTGTG
CCATAGGCCGGCAGCTGTAGCTCCAATTCAGCCCCTAGCCTGGGAACCTCCATATGCCAC
AAATGCAGCCCACAAAAGACAGAAATAATAATAATAACAATAAGAAGAAGGAAAGCATTA
GGAGACCTGCCCTTGACCTCTCAGAGGGCAGGGCTGTTCCTCCCAAGCAAACACCCTTCC
CGATAATGATCACAGTGCCCACTTCCCCTGAGGTTCCTGCAGGAAGATGTTTTTCCTTCC
AGAGCTCGCTCCCCATCTGCACCTTGCTCTGCAGGCAGCTCTGCCCATTCTCTAAGCCCG
GCTTAGAAGGCGTTGGGACTGTCCTGTAGCAAGACACCTAGATGAACCAAGCAAGGGAGA
GGGACCCCTAAGGAAAATGGAAGACCGAAGGGAGAAAGGAAGGAAGCACAAAAGACAAAC
ATCAGGCCCCTAAACAACCTCCCAAGGGCTCTTACTTCATTGCACTGGAATTCTGCTTTA
TCAGAAGTGCCTTGAAATAATGCGTCGTTGCCTTGGGCTTGGAAAACGAAATGGGAAACC
ATTTTACATGGGGCCCGATTCATTTGAGATTTATTGACCGTGAACAAAAGTTTATCTTTA
CACAATCAATAAAAATGGCATTTGTTTAGTAAATTAAGAGTATCAACAATATTGCTAGGG
GTGGCATATGTAGTCTCTTAAATGATACTTTTTGGGCACTTTAGGACTATCCATTTAGAA
ATAGTGAATGCATGGGCTAGTTATCATCAGTTCTTATGTATTTGTTAGATAAACATCTGC
AAGGCCTTTACTTGGCGACCTTTTGTAAGACATTAGTCTGAGACACTATGTATGTACTTG
AAAATAATAAAGTTGCATTTCTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               672-778, - strand, RNAz p=0.753707
               

               
               927-1042, - strand, RNAz p=0.736804

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               672-778, - strand, RNAz p=0.753707
               

               
               927-1042, - strand, RNAz p=0.736804

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               73-259, gnl|bosTau2|chr3 (4893334-4893148)
               

               
               73-259, gnl|Hg17|chr1 (156925176-156925368)
               

               
               73-259, gnl|Mm7|chr1 (172243814-172243610)
               


               
               631-1293, gnl|bosTau2|chr3 (4893035-4892375)
               

               
               631-1293, gnl|Hg17|chr1 (156925788-156926457)
               

               
               631-1293, gnl|Mm7|chr1 (172243518-172242667)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-259, gnl|bosTau2|chr3 (4893334-4893148)
               

               
               73-259, gnl|Hg17|chr1 (156925176-156925368)
               

               
               73-259, gnl|Mm7|chr1 (172243814-172243610)
               


               
               631-1293, gnl|bosTau2|chr3 (4893035-4892375)
               

               
               631-1293, gnl|Hg17|chr1 (156925788-156926457)
               

               
               631-1293, gnl|Mm7|chr1 (172243518-172242667)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               fbs (1.57812)
               

               
               fhi (1.35662)
               

               
               spc (1.13366)
               

               
               vin (0.997672)
               

               
               isp (0.902256)
               

               
               ldo (0.873024)
               

               
               hyp (0.85702)
               

               
               fcc (0.791139)
               

               
               ssp (0.677599)
               

               
               ret (0.643666)
               

               
               sme (0.610874)
               

               
               ste (0.540833)
               

               
               tbr (0.462535)
               

               
               ton (0.351)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (1.57812)
               

               
               fhi (1.35662)
               

               
               spc (1.13366)
               

               
               vin (0.997672)
               

               
               isp (0.902256)
               

               
               ldo (0.873024)
               

               
               hyp (0.85702)
               

               
               fcc (0.791139)
               

               
               ssp (0.677599)
               

               
               ret (0.643666)
               

               
               sme (0.610874)
               

               
               ste (0.540833)
               

               
               tbr (0.462535)
               

               
               ton (0.351)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)

	672-778, - strand, RNAz p=0.753707
	927-1042, - strand, RNAz p=0.736804

	73-259, gnl\|bosTau2\|chr3 (4893334-4893148)
	73-259, gnl\|Hg17\|chr1 (156925176-156925368)
	73-259, gnl\|Mm7\|chr1 (172243814-172243610)

	631-1293, gnl\|bosTau2\|chr3 (4893035-4892375)
	631-1293, gnl\|Hg17\|chr1 (156925788-156926457)
	631-1293, gnl\|Mm7\|chr1 (172243518-172242667)

	fbs (1.57812)
	fhi (1.35662)
	spc (1.13366)
	vin (0.997672)
	isp (0.902256)
	ldo (0.873024)
	hyp (0.85702)
	fcc (0.791139)
	ssp (0.677599)
	ret (0.643666)
	sme (0.610874)
	ste (0.540833)
	tbr (0.462535)
	ton (0.351)
	fce (0.271592)
	cbe (0.239234)
	ecc (0.23007)
	ece (0.229305)
	nms (0.213858)
	nje (0.16592)
	bfe (0.149858)
	ova (0.129132)
	cbr (0.127975)