Non-Coding RNA Search

Ss1.1-Mixc-0044,j03.5

Sequence:


               
               GCGGGGCCGCGTCACGTCAGGGCCAAAGGCGGCCTTGTCGCCCTGGCGACGGTGCCCTGG
CGACGGTTTCCCAGCTCCGTACGGCCACCCGCTAAGCCCTCTTCGCGAGAAAGACGGAGG
CGAAGAAGATTAAGCCATGTCGGTCTCCCAGTCCTTTTCTGTGGGCGCGTCCTTCTCTGC
GGTCGATGGGCTGCCTGAGACTGAAAAGACCGCCGGGGAGTCGGAGAACACCTACATTCT
GCGGCCCATTTTCCAGCAAAGGTTCAGACCCTCTGTGGTTAAAGACTGTATTCATGCTGT
GCTCAAGGAGGAACTGGCAAATGCTGAATACTCTCCAGAAGAAATGCCTCAGCTCACAAA
ACGTTTATCAGAAAATATTAAAGATAAACTAAAAGGAATGGGATTTGACCGATATAAAAT
GGTGGTGCAAGTAGTGATTGGAGAACAAAGAGGGGAAGGAGTATTTATGGCTGCTCGCTG
TTTCTGGGATGCCGACACTGACAACTGCACGCATGATGTTTTCATGAATGACAGTTTATT
CTGTGTTGTAGCAGCATTTGGCTGTTTCTACTATTGAATCTTTGAAAGCTGGAAAAGATA
TGACCATGAAGAAATATGAACTTTTTTATATTGTTAAATATCTTGACAAAATAAAGTTGG
CAGTTTGGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGGCCGCGTCACGTCAGGGCCAAAGGCGGCCTTGTCGCCCTGGCGACGGTGCCCTGG
CGACGGTTTCCCAGCTCCGTACGGCCACCCGCTAAGCCCTCTTCGCGAGAAAGACGGAGG
CGAAGAAGATTAAGCCATGTCGGTCTCCCAGTCCTTTTCTGTGGGCGCGTCCTTCTCTGC
GGTCGATGGGCTGCCTGAGACTGAAAAGACCGCCGGGGAGTCGGAGAACACCTACATTCT
GCGGCCCATTTTCCAGCAAAGGTTCAGACCCTCTGTGGTTAAAGACTGTATTCATGCTGT
GCTCAAGGAGGAACTGGCAAATGCTGAATACTCTCCAGAAGAAATGCCTCAGCTCACAAA
ACGTTTATCAGAAAATATTAAAGATAAACTAAAAGGAATGGGATTTGACCGATATAAAAT
GGTGGTGCAAGTAGTGATTGGAGAACAAAGAGGGGAAGGAGTATTTATGGCTGCTCGCTG
TTTCTGGGATGCCGACACTGACAACTGCACGCATGATGTTTTCATGAATGACAGTTTATT
CTGTGTTGTAGCAGCATTTGGCTGTTTCTACTATTGAATCTTTGAAAGCTGGAAAAGATA
TGACCATGAAGAAATATGAACTTTTTTATATTGTTAAATATCTTGACAAAATAAAGTTGG
CAGTTTGGCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55621782|ref|XP_516972.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55621782|ref|XP_516972.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               260-396, gnl|bosTau2|chr1 (42309703-42309567)
               

               
               260-396, gnl|Hg17|chr3 (197531414-197531278)
               

               
               260-396, gnl|Mm7|chr16 (32097343-32097479)
               


               
               530-671, gnl|bosTau2|chr1 (42285176-42285031)
               

               
               530-671, gnl|Hg17|chr3 (197506555-197506405)
               

               
               530-671, gnl|Mm7|chr16 (32103281-32103417)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               260-396, gnl|bosTau2|chr1 (42309703-42309567)
               

               
               260-396, gnl|Hg17|chr3 (197531414-197531278)
               

               
               260-396, gnl|Mm7|chr16 (32097343-32097479)
               


               
               530-671, gnl|bosTau2|chr1 (42285176-42285031)
               

               
               530-671, gnl|Hg17|chr3 (197506555-197506405)
               

               
               530-671, gnl|Mm7|chr16 (32103281-32103417)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               tes (0.623441)
               

               
               pro (0.512033)
               

               
               fcc (0.39557)
               

               
               fat (0.294855)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               pro (0.512033)
               

               
               fcc (0.39557)
               

               
               fat (0.294855)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               ece (0.229305)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	260-396, gnl\|bosTau2\|chr1 (42309703-42309567)
	260-396, gnl\|Hg17\|chr3 (197531414-197531278)
	260-396, gnl\|Mm7\|chr16 (32097343-32097479)

	530-671, gnl\|bosTau2\|chr1 (42285176-42285031)
	530-671, gnl\|Hg17\|chr3 (197506555-197506405)
	530-671, gnl\|Mm7\|chr16 (32103281-32103417)

	tes (0.623441)
	pro (0.512033)
	fcc (0.39557)
	fat (0.294855)
	sug (0.254582)
	pgl (0.236967)
	ece (0.229305)
	col (0.195008)
	cmu (0.186393)
	mcp (0.170648)
	cki (0.165235)
	cli (0.152812)
	csk (0.140746)
	cst (0.140036)
	ste (0.135208)
	tra (0.123092)
	spc (0.113366)