Ss1.1-Mixc-0044,m04.5
|
CACCCAGGGAAAGGCTAGGCTAACGTGAAAGTACAGACCCTAGCTCTCTCTTCGTATGGA
TCGGAGGGCAGAGTTCAAGAGATGGAAGGCGCAGTGTCTAAGCAAAGCGGACTTCAGCCG
GAAGGGCTGTGTGGACGAGGATGTGGTAGAGATCGTGCAGCTCCTGAATGGTCGAGAACA
GTTTTTCACTACCAGTTCCTGCGCTGGCCGCATCATCCTTCTAGAGCAGGGTATGGATAG
TCTTGAGGTTCAGAAACAAAACTGTTGCTGGCTACTGGTTTCACACAAACCTTGTGTGAA
AGATGATGTGATTGTAGCCCTAAAGAAAGCGAATGGTGATGCCATTTTGAAATTTGAACC
ACTTGTTCTTCATGTGCAGTGTCGACAATTGCAGGATGCACAGATTCTGCATTCAGTGGC
AATAGATTCTGGTTTCAGGAACTCTGGCATAACAGTGGGAAAGAGAGGAAAGACTATGTT
GGCTGTCCGGAGCACACATGGCTTAGAAGTTCCATTAAGCCATAAAGGAAAACTGATGGT
GACAGAGGAATATATTGACTTCCTGTTAAAGATAGCAAACCACAAAATGGAGGAAAACAA
GAAGAGAATTGAAAGGTTTTACAACTGTCTACAACTTGCTTTGGAAAAAGAAACTACTAC
TACTAACTCACATCCCAAAGAGAAAATCAAAGAGAAAAATAACTCATATAAGAAAAAAAG
TAACCCAGGAAAAGCACATGACAAATGTGTTACTGAAGAAAATGATAAAGTACTTGAAAA
TGATGATGATGATGATCCAGGAATCAGCGTTACCATTTTCCCTGAAGACTACTGAGATTT
GGTTCTGAAATGTCTTTTTAGAATAATGTTTCTAATAGATATTATAAAGCTGCTCTTCAT
AAGAGTATTTTAGTTTGTTGAGTGAATCAGCCTTTCAGAAAAAGCAAGACTAAAATTTTC
TCTATATTTTAGAGAAAGCTTTAGGTTTTAAAAATAACTGTATAATATTTGCTCTTAAAT
ACTGTCTCTTTTAGTCACATAGCATTGCAAAAATAAATTGATTTCTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CACCCAGGGAAAGGCTAGGCTAACGTGAAAGTACAGACCCTAGCTCTCTCTTCGTATGGA
TCGGAGGGCAGAGTTCAAGAGATGGAAGGCGCAGTGTCTAAGCAAAGCGGACTTCAGCCG
GAAGGGCTGTGTGGACGAGGATGTGGTAGAGATCGTGCAGCTCCTGAATGGTCGAGAACA
GTTTTTCACTACCAGTTCCTGCGCTGGCCGCATCATCCTTCTAGAGCAGGGTATGGATAG
TCTTGAGGTTCAGAAACAAAACTGTTGCTGGCTACTGGTTTCACACAAACCTTGTGTGAA
AGATGATGTGATTGTAGCCCTAAAGAAAGCGAATGGTGATGCCATTTTGAAATTTGAACC
ACTTGTTCTTCATGTGCAGTGTCGACAATTGCAGGATGCACAGATTCTGCATTCAGTGGC
AATAGATTCTGGTTTCAGGAACTCTGGCATAACAGTGGGAAAGAGAGGAAAGACTATGTT
GGCTGTCCGGAGCACACATGGCTTAGAAGTTCCATTAAGCCATAAAGGAAAACTGATGGT
GACAGAGGAATATATTGACTTCCTGTTAAAGATAGCAAACCACAAAATGGAGGAAAACAA
GAAGAGAATTGAAAGGTTTTACAACTGTCTACAACTTGCTTTGGAAAAAGAAACTACTAC
TACTAACTCACATCCCAAAGAGAAAATCAAAGAGAAAAATAACTCATATAAGAAAAAAAG
TAACCCAGGAAAAGCACATGACAAATGTGTTACTGAAGAAAATGATAAAGTACTTGAAAA
TGATGATGATGATGATCCAGGAATCAGCGTTACCATTTTCCCTGAAGACTACTGAGATTT
GGTTCTGAAATGTCTTTTTAGAATAATGTTTCTAATAGATATTATAAAGCTGCTCTTCAT
AAGAGTATTTTAGTTTGTTGAGTGAATCAGCCTTTCAGAAAAAGCAAGACTAAAATTTTC
TCTATATTTTAGAGAAAGCTTTAGGTTTTAAAAATAACTGTATAATATTTGCTCTTAAAT
ACTGTCTCTTTTAGTCACATAGCATTGCAAAAATAAATTGATTTCTAA
|
|
gi|62751656|ref|NP_001015620.1| |
Protein identifier
|
gi|62751656|ref|NP_001015620.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
17-237, gnl|bosTau2|chr3 (49816970-49816750) |
|
17-237, gnl|Hg17|chr1 (74910925-74911130) |
|
17-237, gnl|Mm7|chr3 (154505532-154505317) |
| |
|
609-989, gnl|bosTau2|chr3 (49794968-49794600) |
|
609-989, gnl|canFam2|chr6 (74697315-74697026) |
|
609-989, gnl|dasNov1|scaffold_246170 (420-138) |
|
609-989, gnl|echTel1|scaffold_296883 (60137-59851) |
|
609-989, gnl|hg17|chr1 (74941532-74941823) |
|
609-989, gnl|Hg17|chr1 (74941592-74941921) |
|
609-989, gnl|loxAfr1|scaffold_9378 (40258-39970) |
|
609-989, gnl|mm7|chr3 (154488832-154488548) |
|
609-989, gnl|Mm7|chr3 (154488769-154488422) |
|
609-989, gnl|monDom2|scaffold_217 (81676-81968) |
|
609-989, gnl|oryCun1|scaffold_213395 (345779-346059) |
|
609-989, gnl|panTro1|chr1 (73502704-73502995) |
|
609-989, gnl|rheMac2|chr1 (77585457-77585745) |
|
609-989, gnl|rn3|chr2 (252426217-252425935) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
17-237, gnl|bosTau2|chr3 (49816970-49816750) |
|
17-237, gnl|Hg17|chr1 (74910925-74911130) |
|
17-237, gnl|Mm7|chr3 (154505532-154505317) |
| |
|
609-989, gnl|bosTau2|chr3 (49794968-49794600) |
|
609-989, gnl|canFam2|chr6 (74697315-74697026) |
|
609-989, gnl|dasNov1|scaffold_246170 (420-138) |
|
609-989, gnl|echTel1|scaffold_296883 (60137-59851) |
|
609-989, gnl|hg17|chr1 (74941532-74941823) |
|
609-989, gnl|Hg17|chr1 (74941592-74941921) |
|
609-989, gnl|loxAfr1|scaffold_9378 (40258-39970) |
|
609-989, gnl|mm7|chr3 (154488832-154488548) |
|
609-989, gnl|Mm7|chr3 (154488769-154488422) |
|
609-989, gnl|monDom2|scaffold_217 (81676-81968) |
|
609-989, gnl|oryCun1|scaffold_213395 (345779-346059) |
|
609-989, gnl|panTro1|chr1 (73502704-73502995) |
|
609-989, gnl|rheMac2|chr1 (77585457-77585745) |
|
609-989, gnl|rn3|chr2 (252426217-252425935) |
|
lin (0.436808) |
|
vin (0.332557) |
|
fco (0.314416) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
duo (0.172801) |
|
tbr (0.154178) |
|
ski (0.146735) |
|
hlv (0.139256) |
|
kid (0.129735) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
lin (0.436808) |
|
vin (0.332557) |
|
fco (0.314416) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
duo (0.172801) |
|
tbr (0.154178) |
|
ski (0.146735) |
|
hlv (0.139256) |
|
kid (0.129735) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
ecc (0.115035) |
