Non-Coding RNA Search

Ss1.1-Mixc-0044,n01.5

Sequence:


               
               AGCGGCGCCGGAACGGCGCCACGTCCCCTCCGGCCACTTCGAGTGAGGCCGGTTTCGGGC
GGGGCCCGTGGGGTGTGGAGGGCCCCAGCCTCGTTACAGCGGTTCTTCCCCTCACAACAC
AGACATGGCGGCCGAGAAGGACCAGCAGAAGGATGCCGAGGCGGAAGGGCTGAGCGCCAC
GACCCTGCTGCCGAAACTGATTCCCTCTGGCGCGGGCCGTGAGTGGCTGGAGCGGCGCCG
TGCTACCATCCGCCCCTGGGGCTCCTTCGTGGACCAGCGGCGTTTTTCGCGTCCCCGCAA
CCTGGGCGAGCTTTGCCAGCGCCTCGTACGCAACGTGGAATACTACCAAAGCAACTATGT
GTTTGTGTTCCTGGGCCTCATCCTGTACTGCGTGGTAACATCGCCCATGCTGCTGGTAGC
TCTGGCTGTCTTCTTTGGCGCCTGTTACATCCTCTATCTGCGCACGTTGCAGTCCAAGTT
TGTGCTGTTTGGCCGAGAGGTGAGCCCCGCCCATCAGTATGCCCTGGCCGGGGGCGTCTC
CTTTCCCTTCTTCTGGCTGGCTGGCGCGGGATCCGCCGTCTTCTGGGTCCTAGGAGCCAC
CCTCGTGGTCATCGGCTCCCACGCCGCCTTCCACCAGATAGAGGCTGTGGACGGGGAGGA
GCTGCAGATGGAACCTGTGTGAGGTGTCTTCAAGGACATGTCGGCCTCCCAAGCCAGCTG
CCCCGTCCCTTCTCAGCCCCATCCCGCATGGCTCTGCTCTTGCCAAAGGCCCCCTTCCCA
TTACAAGCCCAGGGAGGGACTCCAGCTTTGGAAATAAAGCTGTTACAGTTGTTCAGCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGGCGCCGGAACGGCGCCACGTCCCCTCCGGCCACTTCGAGTGAGGCCGGTTTCGGGC
GGGGCCCGTGGGGTGTGGAGGGCCCCAGCCTCGTTACAGCGGTTCTTCCCCTCACAACAC
AGACATGGCGGCCGAGAAGGACCAGCAGAAGGATGCCGAGGCGGAAGGGCTGAGCGCCAC
GACCCTGCTGCCGAAACTGATTCCCTCTGGCGCGGGCCGTGAGTGGCTGGAGCGGCGCCG
TGCTACCATCCGCCCCTGGGGCTCCTTCGTGGACCAGCGGCGTTTTTCGCGTCCCCGCAA
CCTGGGCGAGCTTTGCCAGCGCCTCGTACGCAACGTGGAATACTACCAAAGCAACTATGT
GTTTGTGTTCCTGGGCCTCATCCTGTACTGCGTGGTAACATCGCCCATGCTGCTGGTAGC
TCTGGCTGTCTTCTTTGGCGCCTGTTACATCCTCTATCTGCGCACGTTGCAGTCCAAGTT
TGTGCTGTTTGGCCGAGAGGTGAGCCCCGCCCATCAGTATGCCCTGGCCGGGGGCGTCTC
CTTTCCCTTCTTCTGGCTGGCTGGCGCGGGATCCGCCGTCTTCTGGGTCCTAGGAGCCAC
CCTCGTGGTCATCGGCTCCCACGCCGCCTTCCACCAGATAGAGGCTGTGGACGGGGAGGA
GCTGCAGATGGAACCTGTGTGAGGTGTCTTCAAGGACATGTCGGCCTCCCAAGCCAGCTG
CCCCGTCCCTTCTCAGCCCCATCCCGCATGGCTCTGCTCTTGCCAAAGGCCCCCTTCCCA
TTACAAGCCCAGGGAGGGACTCCAGCTTTGGAAATAAAGCTGTTACAGTTGTTCAGCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q52NJ0_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q52NJ0_PIG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               178-394, gnl|bosTau2|chr18 (44707665-44707449)
               

               
               178-394, gnl|Hg17|chr19 (47154943-47154727)
               

               
               178-394, gnl|Mm7|chr7 (21761804-21761588)
               


               
               592-840, gnl|bosTau2|chr18 (44705441-44705196)
               

               
               592-840, gnl|Hg17|chr19 (47152928-47152675)
               

               
               592-840, gnl|Mm7|chr7 (21759498-21759237)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-394, gnl|bosTau2|chr18 (44707665-44707449)
               

               
               178-394, gnl|Hg17|chr19 (47154943-47154727)
               

               
               178-394, gnl|Mm7|chr7 (21761804-21761588)
               


               
               592-840, gnl|bosTau2|chr18 (44705441-44705196)
               

               
               592-840, gnl|Hg17|chr19 (47152928-47152675)
               

               
               592-840, gnl|Mm7|chr7 (21759498-21759237)

Expressed library(ies): 43 entry(ies)

More info

Expressed library(ies): 43 entry(ies)

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               cov (1.32153)
               

               
               cly (0.965135)
               

               
               ese (0.885516)
               

               
               eru (0.720288)
               

               
               pla (0.66836)
               

               
               cag (0.604778)
               

               
               nlu (0.575043)
               

               
               nca (0.547495)
               

               
               ton (0.526501)
               

               
               fbs (0.526039)
               

               
               duo (0.518403)
               

               
               eep (0.490256)
               

               
               csp (0.483559)
               

               
               jca (0.45584)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               pgl (0.35545)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               cli (0.305623)
               

               
               jej (0.296765)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (1.32153)
               

               
               cly (0.965135)
               

               
               ese (0.885516)
               

               
               eru (0.720288)
               

               
               pla (0.66836)
               

               
               cag (0.604778)
               

               
               nlu (0.575043)
               

               
               nca (0.547495)
               

               
               ton (0.526501)
               

               
               fbs (0.526039)
               

               
               duo (0.518403)
               

               
               eep (0.490256)
               

               
               csp (0.483559)
               

               
               jca (0.45584)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               pgl (0.35545)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               cli (0.305623)
               

               
               jej (0.296765)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	178-394, gnl\|bosTau2\|chr18 (44707665-44707449)
	178-394, gnl\|Hg17\|chr19 (47154943-47154727)
	178-394, gnl\|Mm7\|chr7 (21761804-21761588)

	592-840, gnl\|bosTau2\|chr18 (44705441-44705196)
	592-840, gnl\|Hg17\|chr19 (47152928-47152675)
	592-840, gnl\|Mm7\|chr7 (21759498-21759237)

	cov (1.32153)
	cly (0.965135)
	ese (0.885516)
	eru (0.720288)
	pla (0.66836)
	cag (0.604778)
	nlu (0.575043)
	nca (0.547495)
	ton (0.526501)
	fbs (0.526039)
	duo (0.518403)
	eep (0.490256)
	csp (0.483559)
	jca (0.45584)
	nms (0.427716)
	amn (0.417711)
	elu (0.385356)
	pgl (0.35545)
	eye (0.341006)
	fhi (0.339155)
	cli (0.305623)
	jej (0.296765)
	hyp (0.285673)
	pty (0.285429)
	cga (0.279096)
	nmm (0.265604)
	ute (0.265569)
	clu (0.239292)
	ebs (0.236602)
	ece (0.229305)
	eje (0.197668)
	col (0.195008)
	cmu (0.186393)
	ill (0.175593)
	mcp (0.170648)
	eli (0.151814)
	ski (0.146735)
	lnt (0.142308)
	hlv (0.139256)
	che (0.136314)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)