Non-Coding RNA Search

Ss1.1-Mixc-0044,e04.5

Sequence:


               
               GTGATCTCCCTTCTGTGGGGTATCAACACTCAGTCTCTTCCCCCCTGTCCTGACTCCCCC
TGGGTCCTTCCCATCAGAGCCAGGCTGGGGTGGACCTGACCCTGGGGCAGGCAGCCCCCT
GAAATTGGGGAGGGAACGGCAGAGAGGAAAAAGGCAGAACTGGACTCTGGCAATGCCTCT
CTGTCTCCCTCCTTCTCCTGTCCCGCGCCTCCAGGGCTGAGGGGTGCAGGGCTCTGGCAG
CTATGGGGTGAGGTTTCCTGGCGCCTCACCCTCCTTCTGGCACCACCTCTTTCCCTTCTG
AAGAGGCAGCGGCCCCCAAAGCGACTGCTGCTCCTGCTCCGAGGGTGTATATATTTTTTA
CCAAAGGCTCTGGAATTGTAAATTTATTTTTTAAAACTCAAAGAGGGAAAGAGCCTTGTA
TCATATGTACACGATGTATCAGAAGTTATGTTGTACAGTCCCTTTTATACCGCAGTCTTG
CTCCTGCTGCACAAATGGTCTGTGGACGCCCCGACCCCACCACATCCACAGGGCGCCGTG
TCCCACCCCCTCGGTCCCTCACAGACAGTGACCGTGCCCCCTCCTGCTCCCTGCCTCCTC
CCTGCTACTGCGGATGTGCCCTTCCTCCCGACCCCTCTCAGCAGCCTTGTCACTCCAGCT
CTCCCAGCCCTCCCTCAGCCCTGGGGCCCACTGGTCCCCTCTTGGCTGCTGCCCGCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGATCTCCCTTCTGTGGGGTATCAACACTCAGTCTCTTCCCCCCTGTCCTGACTCCCCC
TGGGTCCTTCCCATCAGAGCCAGGCTGGGGTGGACCTGACCCTGGGGCAGGCAGCCCCCT
GAAATTGGGGAGGGAACGGCAGAGAGGAAAAAGGCAGAACTGGACTCTGGCAATGCCTCT
CTGTCTCCCTCCTTCTCCTGTCCCGCGCCTCCAGGGCTGAGGGGTGCAGGGCTCTGGCAG
CTATGGGGTGAGGTTTCCTGGCGCCTCACCCTCCTTCTGGCACCACCTCTTTCCCTTCTG
AAGAGGCAGCGGCCCCCAAAGCGACTGCTGCTCCTGCTCCGAGGGTGTATATATTTTTTA
CCAAAGGCTCTGGAATTGTAAATTTATTTTTTAAAACTCAAAGAGGGAAAGAGCCTTGTA
TCATATGTACACGATGTATCAGAAGTTATGTTGTACAGTCCCTTTTATACCGCAGTCTTG
CTCCTGCTGCACAAATGGTCTGTGGACGCCCCGACCCCACCACATCCACAGGGCGCCGTG
TCCCACCCCCTCGGTCCCTCACAGACAGTGACCGTGCCCCCTCCTGCTCCCTGCCTCCTC
CCTGCTACTGCGGATGTGCCCTTCCTCCCGACCCCTCTCAGCAGCCTTGTCACTCCAGCT
CTCCCAGCCCTCCCTCAGCCCTGGGGCCCACTGGTCCCCTCTTGGCTGCTGCCCGCCCCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               254-401, - strand, RNAz p=0.917113
               

               
               618-720, - strand, RNAz p=0.999994

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-401, - strand, RNAz p=0.917113
               

               
               618-720, - strand, RNAz p=0.999994

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-720, gnl|bosTau2|chr19 (34429143-34428380)
               

               
               8-720, gnl|Hg17|chr17 (35604533-35605285)
               

               
               8-720, gnl|Mm7|chr11 (98961172-98961895)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-720, gnl|bosTau2|chr19 (34429143-34428380)
               

               
               8-720, gnl|Hg17|chr17 (35604533-35605285)
               

               
               8-720, gnl|Mm7|chr11 (98961172-98961895)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fbs (0.175346)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               eru (0.120048)

	254-401, - strand, RNAz p=0.917113
	618-720, - strand, RNAz p=0.999994

	8-720, gnl\|bosTau2\|chr19 (34429143-34428380)
	8-720, gnl\|Hg17\|chr17 (35604533-35605285)
	8-720, gnl\|Mm7\|chr11 (98961172-98961895)