Non-Coding RNA Search

Ss1.1-Mixg-0001b03.3

Sequence:


               
               CCATCTGGCAGTGAGACGGAAAGCCCAGGCCTGCAGATCTATCCTTATGAAATGCTGGTG
GTGACCAACAAGGGGCGAACCAAGCTGCCTCCGGGTGTGGATCGGATGAGGCTGGAGAGG
CATCTGTCAGCAGAGGACTTCTCCAGGGTATTTTCCATGTCTCCCGAAGAGTTTGGCAAG
CTGGCTCTGTGGAAGCGAAATGAACTCAAGAAAAAAGCCTCTCTCTTCTGACGACCCCCA
CCCACTCTGGAACTGACCTTCACCCCTGCTGCATCAGGGCTCTGCAGCTGGGGTCCCTAG
ACCCCAAAGCATCAGCTCTGGGCAGCAGGGAGGTGGGGTGAGGGTGGGGTTGGCTCTGAT
GCCCAGGTTGAGGGGGAGCAAGACCTCTGCAGTGTTGGGACTCTCTTCCCCATAATGCTC
TGGGGGGGTTCCCCTTCTCACATCCCAGGTCCTCATTGCACTGGACAAACCCAGTCTGGA
CTCCAGCACACACAGAGTTAATGTCAGCACCCTCTCCGTGCCCCACCCCCACCCCCCACC
ACCTCCAGGTCCCCCGAAGAGAGTGATGAGAAATGAACCTGCACTTAGTGGTCAGGCCTG
TGTGCTATCCTGACCAATGGATGGGGGGATCCTCGGGCCTGGCAGGAAGGCAGAGAAGCC
CCAGGACCCTGTGTGCACCCAAGCACTCCTCAGCAGCTGACCTCAGACAGGTCCCCTGCA
CCTGGGCCTCCCGCCCCTCTGACTCCAGCAGGAGCAGCGCTCGGCCTCCAGCAGGGAGGC
CACCCTTTCCTCTTCCTTGCGACCCCCCAAGCCTTGAAGCCTCTTGCTCCAGCCCCGTGG
CTTCCCCAGAAGCCTTGGCTTAGAGTGGAGATGTCGCCTATACAGAACCCCAGCCCACCA
GCAGCCTCCAGGCCAAGTCATCGAGAATGCTACCTTCTAAGGACCCGGGCCCTGCACAGA
ACCCAGGCCTTTGGGCTCCCTTGAATGGGATCAACAGCTGGGCTGTGTTCTGACCCCGGG
TCTTGCCCAGGCCCGTGCATCTCCCACCACGCTCTTGAAAGAATGTAATTTCTTGGGGCA
CCCCAGCTGCTTCCCCCACCTCACTCTCTACCCTACCTTTACCACGCTCTCAGCTTTTCT
TCTCTGCAAATACATACGTGTATATAATTATATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCTGGCAGTGAGACGGAAAGCCCAGGCCTGCAGATCTATCCTTATGAAATGCTGGTG
GTGACCAACAAGGGGCGAACCAAGCTGCCTCCGGGTGTGGATCGGATGAGGCTGGAGAGG
CATCTGTCAGCAGAGGACTTCTCCAGGGTATTTTCCATGTCTCCCGAAGAGTTTGGCAAG
CTGGCTCTGTGGAAGCGAAATGAACTCAAGAAAAAAGCCTCTCTCTTCTGACGACCCCCA
CCCACTCTGGAACTGACCTTCACCCCTGCTGCATCAGGGCTCTGCAGCTGGGGTCCCTAG
ACCCCAAAGCATCAGCTCTGGGCAGCAGGGAGGTGGGGTGAGGGTGGGGTTGGCTCTGAT
GCCCAGGTTGAGGGGGAGCAAGACCTCTGCAGTGTTGGGACTCTCTTCCCCATAATGCTC
TGGGGGGGTTCCCCTTCTCACATCCCAGGTCCTCATTGCACTGGACAAACCCAGTCTGGA
CTCCAGCACACACAGAGTTAATGTCAGCACCCTCTCCGTGCCCCACCCCCACCCCCCACC
ACCTCCAGGTCCCCCGAAGAGAGTGATGAGAAATGAACCTGCACTTAGTGGTCAGGCCTG
TGTGCTATCCTGACCAATGGATGGGGGGATCCTCGGGCCTGGCAGGAAGGCAGAGAAGCC
CCAGGACCCTGTGTGCACCCAAGCACTCCTCAGCAGCTGACCTCAGACAGGTCCCCTGCA
CCTGGGCCTCCCGCCCCTCTGACTCCAGCAGGAGCAGCGCTCGGCCTCCAGCAGGGAGGC
CACCCTTTCCTCTTCCTTGCGACCCCCCAAGCCTTGAAGCCTCTTGCTCCAGCCCCGTGG
CTTCCCCAGAAGCCTTGGCTTAGAGTGGAGATGTCGCCTATACAGAACCCCAGCCCACCA
GCAGCCTCCAGGCCAAGTCATCGAGAATGCTACCTTCTAAGGACCCGGGCCCTGCACAGA
ACCCAGGCCTTTGGGCTCCCTTGAATGGGATCAACAGCTGGGCTGTGTTCTGACCCCGGG
TCTTGCCCAGGCCCGTGCATCTCCCACCACGCTCTTGAAAGAATGTAATTTCTTGGGGCA
CCCCAGCTGCTTCCCCCACCTCACTCTCTACCCTACCTTTACCACGCTCTCAGCTTTTCT
TCTCTGCAAATACATACGTGTATATAATTATATATA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|40889482|pdb|1QZP|A

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|40889482|pdb|1QZP|A

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               253-356, - strand, RNAz p=0.644614
               

               
               669-915, - strand, RNAz p=0.958963

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               253-356, - strand, RNAz p=0.644614
               

               
               669-915, - strand, RNAz p=0.958963

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               116-1176, gnl|bosTau2|chr8 (31510556-31509470)
               

               
               116-1176, gnl|Hg17|chr8 (21994805-21995860)
               

               
               116-1176, gnl|Mm7|chr14 (65249340-65248285)
               


               
               796-1173, gnl|bosTau2|chr27 (8635764-8636147)
               

               
               796-1173, gnl|Hg17|chr8 (21995478-21995857)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-1176, gnl|bosTau2|chr8 (31510556-31509470)
               

               
               116-1176, gnl|Hg17|chr8 (21994805-21995860)
               

               
               116-1176, gnl|Mm7|chr14 (65249340-65248285)
               


               
               796-1173, gnl|bosTau2|chr27 (8635764-8636147)
               

               
               796-1173, gnl|Hg17|chr8 (21995478-21995857)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               eli (0.455443)
               

               
               nbm (0.297974)
               

               
               nca (0.136874)
               

               
               eep (0.122564)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.455443)
               

               
               nbm (0.297974)
               

               
               nca (0.136874)
               

               
               eep (0.122564)

	253-356, - strand, RNAz p=0.644614
	669-915, - strand, RNAz p=0.958963

	116-1176, gnl\|bosTau2\|chr8 (31510556-31509470)
	116-1176, gnl\|Hg17\|chr8 (21994805-21995860)
	116-1176, gnl\|Mm7\|chr14 (65249340-65248285)

	796-1173, gnl\|bosTau2\|chr27 (8635764-8636147)
	796-1173, gnl\|Hg17\|chr8 (21995478-21995857)