Ss1.1-Mixg-0001b09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGGGCGCAGGAGACTTCAGCTCCAAGACACTCATCCACGAGGAAGGATGGCCAGCACC TTCTCAAAATTACTAACTGGCCGCAATGCTTCTTTGTTATTTGCCACCTTGGGCACCGGT GCCCTGACCACCGGGTACTTGATGAATCAGCGGAGCGTGTGTGCTGAGGCCCGGGAGCAG CACAGGCTGTTCCCGCCAAGCGCAGACTACCCTGATCTACGCAAGCACAACAACTGCATG GCTGAGTGCCTCACGCCGGCCATCTACGCCAAGCTCCGCAACAAAGTGACACCCAACGGC TACACCCTGGACCAGTGTATCCAGACTGGTGTGGACAACCCCGGCCACCCCTTCATAAAG ACCGTGGGCATGGTGGCTGGTGATGAGGAGTCCTATGAGGTGTTTGCTGACCTCTTTGAC CCAGTCATCAAGCTGAGGCACAATGGCTACGACCCTCGGGTGATGAAGCACCCCACTGAT CTGGACGCATCCAAGATCACCCAGGGGCAGTTCGACGAGCGCTACGTGCTGTCGTCTCGG GTGCGCACGGGCCGCAGCATCCGCGGGCTGAGCCTGCCGCCCGCCTGTACCCGGGCCGAG CGGAGGGAGGTGGAGAACGTGGCCATCACGGCCCTGGAAGGCCTCAAGGGGGACCTGGCC GGCCGTTACTACAAGCTGTCCGAGATGACGGAGCAGGACCAGCAGCGGCTCATCGACGAC CACTTTCTGTTTGATAAGCCAGTATCCCCTTTACTAACTTGTGCTGGGATGGCCCGTGAC TGGCCAGATGCCAGGGGAATCTGGCACAATTATGACAAGACATTTCTCATCTGGATTAAT GAGGAAGACCACACCAGGGTAATCTCTATGGAGAAAGGAGGCAATATGAAAAGAGTATTT GAGCGATTCTGTCGAGGACTCAAGGAGGTAGAACGTCTAATCCAAGAACGAGGCTGGGAG TTCATGTGGAATGAGCGCCTCGGGTACATTCTGACCTGTCCCTCGAACCTCGGCACGGGA TTACGAGCTGGGGTCCATGTCAGGATCCCAAAACTCAGCAAGGATCCGCGATTTTCTAAG ATCCTGGAGAACCTAAGACTCCAGAAGCGTGGTACAGGTGGTGTGGACACTGCAGCAGTG GCAGACGTGTATGATATTTCCAACATAGACCGAATTGGTCGATCAGAGGTTGAGCTTGTT CAGATAGTCATCGATGGAGTCAATTACCTGGTGGATTGTGAAAAGAAGCTGGAGAGAGGT CAAGATATTAAGGTGCCGCCACCTCTGCCCCAGTTTAGCAGGAAGTGAACTTTCCCTCCC CCAGTTTGAAATAATCTGTCTGCTGGATGACAGACATAAAGCAATTTCTACTCTGAGAGT TTTTATAGACTTGGAAAAATGTAAAATTGTAGGTCCTGTCTATCTTTACAATAAAACTCT CCTTAATAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGGGCGCAGGAGACTTCAGCTCCAAGACACTCATCCACGAGGAAGGATGGCCAGCACC TTCTCAAAATTACTAACTGGCCGCAATGCTTCTTTGTTATTTGCCACCTTGGGCACCGGT GCCCTGACCACCGGGTACTTGATGAATCAGCGGAGCGTGTGTGCTGAGGCCCGGGAGCAG CACAGGCTGTTCCCGCCAAGCGCAGACTACCCTGATCTACGCAAGCACAACAACTGCATG GCTGAGTGCCTCACGCCGGCCATCTACGCCAAGCTCCGCAACAAAGTGACACCCAACGGC TACACCCTGGACCAGTGTATCCAGACTGGTGTGGACAACCCCGGCCACCCCTTCATAAAG ACCGTGGGCATGGTGGCTGGTGATGAGGAGTCCTATGAGGTGTTTGCTGACCTCTTTGAC CCAGTCATCAAGCTGAGGCACAATGGCTACGACCCTCGGGTGATGAAGCACCCCACTGAT CTGGACGCATCCAAGATCACCCAGGGGCAGTTCGACGAGCGCTACGTGCTGTCGTCTCGG GTGCGCACGGGCCGCAGCATCCGCGGGCTGAGCCTGCCGCCCGCCTGTACCCGGGCCGAG CGGAGGGAGGTGGAGAACGTGGCCATCACGGCCCTGGAAGGCCTCAAGGGGGACCTGGCC GGCCGTTACTACAAGCTGTCCGAGATGACGGAGCAGGACCAGCAGCGGCTCATCGACGAC CACTTTCTGTTTGATAAGCCAGTATCCCCTTTACTAACTTGTGCTGGGATGGCCCGTGAC TGGCCAGATGCCAGGGGAATCTGGCACAATTATGACAAGACATTTCTCATCTGGATTAAT GAGGAAGACCACACCAGGGTAATCTCTATGGAGAAAGGAGGCAATATGAAAAGAGTATTT GAGCGATTCTGTCGAGGACTCAAGGAGGTAGAACGTCTAATCCAAGAACGAGGCTGGGAG TTCATGTGGAATGAGCGCCTCGGGTACATTCTGACCTGTCCCTCGAACCTCGGCACGGGA TTACGAGCTGGGGTCCATGTCAGGATCCCAAAACTCAGCAAGGATCCGCGATTTTCTAAG ATCCTGGAGAACCTAAGACTCCAGAAGCGTGGTACAGGTGGTGTGGACACTGCAGCAGTG GCAGACGTGTATGATATTTCCAACATAGACCGAATTGGTCGATCAGAGGTTGAGCTTGTT CAGATAGTCATCGATGGAGTCAATTACCTGGTGGATTGTGAAAAGAAGCTGGAGAGAGGT CAAGATATTAAGGTGCCGCCACCTCTGCCCCAGTTTAGCAGGAAGTGAACTTTCCCTCCC CCAGTTTGAAATAATCTGTCTGCTGGATGACAGACATAAAGCAATTTCTACTCTGAGAGT TTTTATAGACTTGGAAAAATGTAAAATTGTAGGTCCTGTCTATCTTTACAATAAAACTCT CCTTAATAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 83-1448, - strand, RNAz p=0.688869 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 83-1448, - strand, RNAz p=0.688869 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 27-200, gnl|bosTau2|chr7 (51257922-51257749) | |
| 27-200, gnl|Mm7|chr13 (88938339-88938166) | |
| 334-455, gnl|bosTau2|chr18 (38538597-38538718) | |
| 334-455, gnl|Hg17|chr19 (50513088-50512966) | |
| 334-455, gnl|Mm7|chr7 (17097261-17097382) | |
| 619-804, gnl|bosTau2|chr18 (38541239-38541426) | |
| 619-804, gnl|Hg17|chr19 (50507030-50506846) | |
| 619-804, gnl|Mm7|chr7 (17099081-17099265) | |
| 921-1061, gnl|bosTau2|chr21 (34434592-34434732) | |
| 921-1061, gnl|canFam2|chr30 (13435985-13436152) | |
| 921-1061, gnl|danRer3|chrUn (42212025-42212186) | |
| 921-1061, gnl|dasNov1|scaffold_5858 (70482-70360) | |
| 921-1061, gnl|echTel1|scaffold_322287 (297481-297648) | |
| 921-1061, gnl|fr1|chrUn (252312162-252312018) | |
| 921-1061, gnl|galGal2|chr10 (20691474-20691310) | |
| 921-1061, gnl|hg17|chr15 (41677667-41677834) | |
| 921-1061, gnl|Hg17|chr15 (41677676-41677816) | |
| 921-1061, gnl|loxAfr1|scaffold_22371 (14326-14159) | |
| 921-1061, gnl|mm7|chr2 (121103508-121103675) | |
| 921-1061, gnl|Mm7|chr2 (121103517-121103657) | |
| 921-1061, gnl|monDom2|scaffold_53 (10398176-10398010) | |
| 921-1061, gnl|oryCun1|scaffold_181039 (34093-33926) | |
| 921-1061, gnl|panTro1|chr16 (41681304-41681471) | |
| 921-1061, gnl|rheMac2|chr7 (22042097-22042264) | |
| 921-1061, gnl|rn3|chr3 (108062969-108063136) | |
| 921-1061, gnl|tetNig1|chrUn_random (25828302-25828456) | |
| 921-1061, gnl|xenTro1|scaffold_358 (826693-826532) | |
| 1183-1448, gnl|bosTau2|chr7 (51243647-51243381) | |
| 1183-1448, gnl|Hg17|chr5 (80597708-80597973) | |
| 1183-1448, gnl|Mm7|chr13 (88926690-88926428) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 27-200, gnl|bosTau2|chr7 (51257922-51257749) | |
| 27-200, gnl|Mm7|chr13 (88938339-88938166) | |
| 334-455, gnl|bosTau2|chr18 (38538597-38538718) | |
| 334-455, gnl|Hg17|chr19 (50513088-50512966) | |
| 334-455, gnl|Mm7|chr7 (17097261-17097382) | |
| 619-804, gnl|bosTau2|chr18 (38541239-38541426) | |
| 619-804, gnl|Hg17|chr19 (50507030-50506846) | |
| 619-804, gnl|Mm7|chr7 (17099081-17099265) | |
| 921-1061, gnl|bosTau2|chr21 (34434592-34434732) | |
| 921-1061, gnl|canFam2|chr30 (13435985-13436152) | |
| 921-1061, gnl|danRer3|chrUn (42212025-42212186) | |
| 921-1061, gnl|dasNov1|scaffold_5858 (70482-70360) | |
| 921-1061, gnl|echTel1|scaffold_322287 (297481-297648) | |
| 921-1061, gnl|fr1|chrUn (252312162-252312018) | |
| 921-1061, gnl|galGal2|chr10 (20691474-20691310) | |
| 921-1061, gnl|hg17|chr15 (41677667-41677834) | |
| 921-1061, gnl|Hg17|chr15 (41677676-41677816) | |
| 921-1061, gnl|loxAfr1|scaffold_22371 (14326-14159) | |
| 921-1061, gnl|mm7|chr2 (121103508-121103675) | |
| 921-1061, gnl|Mm7|chr2 (121103517-121103657) | |
| 921-1061, gnl|monDom2|scaffold_53 (10398176-10398010) | |
| 921-1061, gnl|oryCun1|scaffold_181039 (34093-33926) | |
| 921-1061, gnl|panTro1|chr16 (41681304-41681471) | |
| 921-1061, gnl|rheMac2|chr7 (22042097-22042264) | |
| 921-1061, gnl|rn3|chr3 (108062969-108063136) | |
| 921-1061, gnl|tetNig1|chrUn_random (25828302-25828456) | |
| 921-1061, gnl|xenTro1|scaffold_358 (826693-826532) | |
| 1183-1448, gnl|bosTau2|chr7 (51243647-51243381) | |
| 1183-1448, gnl|Hg17|chr5 (80597708-80597973) | |
| 1183-1448, gnl|Mm7|chr13 (88926690-88926428) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| ssp (5.82735) | |
| ldo (3.39509) | |
| vin (2.99302) | |
| hea (2.45399) | |
| ste (2.43375) | |
| sme (2.13806) | |
| nms (1.92472) | |
| che (1.9084) | |
| hlv (1.81033) | |
| tbr (1.3876) | |
| mas (1.26183) | |
| isp (1.20301) | |
| ton (0.702001) | |
| bfe (0.599431) | |
| nep (0.183925) | |
| sto (0.179824) | |
| cst (0.140036) | |
| lyg (0.133103) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (5.82735) | |
| ldo (3.39509) | |
| vin (2.99302) | |
| hea (2.45399) | |
| ste (2.43375) | |
| sme (2.13806) | |
| nms (1.92472) | |
| che (1.9084) | |
| hlv (1.81033) | |
| tbr (1.3876) | |
| mas (1.26183) | |
| isp (1.20301) | |
| ton (0.702001) | |
| bfe (0.599431) | |
| nep (0.183925) | |
| sto (0.179824) | |
| cst (0.140036) | |
| lyg (0.133103) |