Ss1.1-Mixg-0001c05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTGGTCGCGGAACAAGTACATCAACACTGATGCAAAGTTCCAGGTGTTCCTGAAGCAG ATCAACAGCTCGCTGGTGGACTCCAACATGCTGGTGCGCTGTGTCACTTTGTCATTGGAC CGATTTGAAAACCAGGTGGACATGAAGGTTGTGGAGGTCCTGTCCGAGTGCCGCCTGCTT GCCTACATATCCCAGGTGCCCACACAGATGTCCTTTCTCTTCCGCCTCATCAATATCATC CACGTGCAGACACTGACCCAGGAGAACGTCAGCTGCCTCAACACCAGCCTGGTGATCCTG ATGCTGGCCCGCCGGAAAGAGCGGCTGCCCCTGTACCTGCGGCTCCTGCAGCGGATGGAG CACAGCAAGAAGTACCCTGGCTTCCTGCTCAACAACTTCCACAACCTACTGCGCTTCTGG CAGCAGCATTACCTGCACAAGGACAAGGACAGCACCTGCCTGGAGAACAGCTCCTGCATC AGCTTCTCATACTGGAAAGAGACTGTGTCCATCTTGCTGAACCCGGACCGCCAGTCACCC TCTGCCCTCGTCAGCTACATCGAGGAGCCCTACATGGACATTGACAGGGACTTCACCGAG GAGTGATCTTGGGCCAGGCCTCGGGAGGCTGCTGGGCCTGGGCCGGCGCGGGTGAGCGTG GGTCCACGCGCGCCTCACGCCCTGCCCTGCCCGCCCCCGCCTTCCCCTGCCTCCCTGCTG CTCTCTGCCTGCCCCGGGGCCTCAGGTACAGGCTCGGTGGGAGGGAGCGTCTAGAAGCCC TTGGCCCCTGGGTCTGAGGGCCCCAGGTCATTGGGGAACCACAGTTCCCTCAAGATTTCC ACCGTGAAGACAGGGGTACTGTGCCCACTCTTCCTCAGAACCCTGGGGCCCTGGCCCCAC CCGGAGGTAAAGGGTCTTTAAAACTAGCTCTGTCTGAGCTCCTGCCCAGGCTCAGCTGTG GGGCCTGGGCCGGGGGAGGGAGATAGGGGCCGCCTCCCCCAACCCGTGAGCAAAGCTTGC CCTGGCCTTTGGCCCCAGGCCGAGGCCTCTGAGCCCCTGGGCAGGGGTGGGGGAGACCCG GGAGAGCTGCCTTCCCCAGGCCTGCCCACCTGGCCTCCCCCGGACCTTTGTTTTCCTTTA GCTCCTCTGGTTCTGTTTGCTCATTGGCCGCTGTGTTCATCCCAGGGGGGTCCCCCAGAA GTGGGGGAGGCCTTTTCCTCCCATCCCCTGGGGCCCAGGGTAGCTGTGCCCTGCTCTGCT CCCACCCCAGGGCAGCATCTTCTGCCTGAGCCGCCCACACAGGAGCCTGCCTGGGGGCAC ACCCCTGGCCCCTCCTTGTGTTGCCAATTTATTAACAAATAAACCAATTAAATGGAGACT ATTAAAGAATTTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTGGTCGCGGAACAAGTACATCAACACTGATGCAAAGTTCCAGGTGTTCCTGAAGCAG ATCAACAGCTCGCTGGTGGACTCCAACATGCTGGTGCGCTGTGTCACTTTGTCATTGGAC CGATTTGAAAACCAGGTGGACATGAAGGTTGTGGAGGTCCTGTCCGAGTGCCGCCTGCTT GCCTACATATCCCAGGTGCCCACACAGATGTCCTTTCTCTTCCGCCTCATCAATATCATC CACGTGCAGACACTGACCCAGGAGAACGTCAGCTGCCTCAACACCAGCCTGGTGATCCTG ATGCTGGCCCGCCGGAAAGAGCGGCTGCCCCTGTACCTGCGGCTCCTGCAGCGGATGGAG CACAGCAAGAAGTACCCTGGCTTCCTGCTCAACAACTTCCACAACCTACTGCGCTTCTGG CAGCAGCATTACCTGCACAAGGACAAGGACAGCACCTGCCTGGAGAACAGCTCCTGCATC AGCTTCTCATACTGGAAAGAGACTGTGTCCATCTTGCTGAACCCGGACCGCCAGTCACCC TCTGCCCTCGTCAGCTACATCGAGGAGCCCTACATGGACATTGACAGGGACTTCACCGAG GAGTGATCTTGGGCCAGGCCTCGGGAGGCTGCTGGGCCTGGGCCGGCGCGGGTGAGCGTG GGTCCACGCGCGCCTCACGCCCTGCCCTGCCCGCCCCCGCCTTCCCCTGCCTCCCTGCTG CTCTCTGCCTGCCCCGGGGCCTCAGGTACAGGCTCGGTGGGAGGGAGCGTCTAGAAGCCC TTGGCCCCTGGGTCTGAGGGCCCCAGGTCATTGGGGAACCACAGTTCCCTCAAGATTTCC ACCGTGAAGACAGGGGTACTGTGCCCACTCTTCCTCAGAACCCTGGGGCCCTGGCCCCAC CCGGAGGTAAAGGGTCTTTAAAACTAGCTCTGTCTGAGCTCCTGCCCAGGCTCAGCTGTG GGGCCTGGGCCGGGGGAGGGAGATAGGGGCCGCCTCCCCCAACCCGTGAGCAAAGCTTGC CCTGGCCTTTGGCCCCAGGCCGAGGCCTCTGAGCCCCTGGGCAGGGGTGGGGGAGACCCG GGAGAGCTGCCTTCCCCAGGCCTGCCCACCTGGCCTCCCCCGGACCTTTGTTTTCCTTTA GCTCCTCTGGTTCTGTTTGCTCATTGGCCGCTGTGTTCATCCCAGGGGGGTCCCCCAGAA GTGGGGGAGGCCTTTTCCTCCCATCCCCTGGGGCCCAGGGTAGCTGTGCCCTGCTCTGCT CCCACCCCAGGGCAGCATCTTCTGCCTGAGCCGCCCACACAGGAGCCTGCCTGGGGGCAC ACCCCTGGCCCCTCCTTGTGTTGCCAATTTATTAACAAATAAACCAATTAAATGGAGACT ATTAAAGAATTTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 469-575, + strand, RNAz p=0.706854 | |
| 1177-1400, - strand, RNAz p=0.999991 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 469-575, + strand, RNAz p=0.706854 | |
| 1177-1400, - strand, RNAz p=0.999991 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 38-146, gnl|bosTau2|chr13 (46543456-46543564) | |
| 38-146, gnl|canFam2|chr24 (27015603-27015743) | |
| 38-146, gnl|danRer3|chr10 (9786725-9786855) | |
| 38-146, gnl|dasNov1|scaffold_129784 (592-732) | |
| 38-146, gnl|echTel1|scaffold_309010 (198884-199020) | |
| 38-146, gnl|fr1|chrUn (4059562-4059435) | |
| 38-146, gnl|galGal2|chr20 (2448309-2448162) | |
| 38-146, gnl|hg17|chr20 (33057140-33057279) | |
| 38-146, gnl|Hg17|chr20 (33057269-33057161) | |
| 38-146, gnl|loxAfr1|scaffold_18804 (31539-31679) | |
| 38-146, gnl|mm7|chr2 (155378499-155378637) | |
| 38-146, gnl|Mm7|chr2 (155378626-155378518) | |
| 38-146, gnl|monDom2|scaffold_6 (11954408-11954268) | |
| 38-146, gnl|oryCun1|scaffold_210665 (107044-107140) | |
| 38-146, gnl|panTro1|chr21 (35066348-35066473) | |
| 38-146, gnl|rheMac2|chr10 (29553697-29553558) | |
| 38-146, gnl|rn3|chr3 (146048486-146048622) | |
| 38-146, gnl|tetNig1|chr11 (9166855-9166733) | |
| 38-146, gnl|xenTro1|scaffold_35 (3141331-3141201) | |
| 260-468, gnl|bosTau2|chr13 (46545116-46545324) | |
| 260-468, gnl|Hg17|chr20 (33055082-33054874) | |
| 260-468, gnl|Mm7|chr2 (155376302-155376094) | |
| 469-579, gnl|bosTau2|chr13 (46545487-46545597) | |
| 469-579, gnl|canFam2|chr24 (27013423-27013562) | |
| 469-579, gnl|danRer3|chr10 (9781763-9781919) | |
| 469-579, gnl|dasNov1|scaffold_196734 (1468-1362) | |
| 469-579, gnl|echTel1|scaffold_309010 (197114-197249) | |
| 469-579, gnl|fr1|chrUn (4060386-4060251) | |
| 469-579, gnl|galGal2|chr20 (2450223-2450095) | |
| 469-579, gnl|hg17|chr20 (33054638-33054773) | |
| 469-579, gnl|Hg17|chr20 (33054747-33054637) | |
| 469-579, gnl|loxAfr1|scaffold_18804 (29269-29404) | |
| 469-579, gnl|mm7|chr2 (155375889-155376024) | |
| 469-579, gnl|Mm7|chr2 (155375998-155375888) | |
| 469-579, gnl|monDom2|scaffold_6 (11959788-11959655) | |
| 469-579, gnl|rheMac2|chr10 (29556487-29556352) | |
| 469-579, gnl|rn3|chr3 (146045855-146045992) | |
| 469-579, gnl|tetNig1|chr11 (9167591-9167456) | |
| 469-579, gnl|xenTro1|scaffold_35 (3142922-3142779) | |
| 1064-1400, gnl|bosTau2|chr13 (46546135-46546474) | |
| 1064-1400, gnl|Hg17|chr20 (33054171-33053873) | |
| 1064-1400, gnl|Mm7|chr2 (155375443-155375141) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 38-146, gnl|bosTau2|chr13 (46543456-46543564) | |
| 38-146, gnl|canFam2|chr24 (27015603-27015743) | |
| 38-146, gnl|danRer3|chr10 (9786725-9786855) | |
| 38-146, gnl|dasNov1|scaffold_129784 (592-732) | |
| 38-146, gnl|echTel1|scaffold_309010 (198884-199020) | |
| 38-146, gnl|fr1|chrUn (4059562-4059435) | |
| 38-146, gnl|galGal2|chr20 (2448309-2448162) | |
| 38-146, gnl|hg17|chr20 (33057140-33057279) | |
| 38-146, gnl|Hg17|chr20 (33057269-33057161) | |
| 38-146, gnl|loxAfr1|scaffold_18804 (31539-31679) | |
| 38-146, gnl|mm7|chr2 (155378499-155378637) | |
| 38-146, gnl|Mm7|chr2 (155378626-155378518) | |
| 38-146, gnl|monDom2|scaffold_6 (11954408-11954268) | |
| 38-146, gnl|oryCun1|scaffold_210665 (107044-107140) | |
| 38-146, gnl|panTro1|chr21 (35066348-35066473) | |
| 38-146, gnl|rheMac2|chr10 (29553697-29553558) | |
| 38-146, gnl|rn3|chr3 (146048486-146048622) | |
| 38-146, gnl|tetNig1|chr11 (9166855-9166733) | |
| 38-146, gnl|xenTro1|scaffold_35 (3141331-3141201) | |
| 260-468, gnl|bosTau2|chr13 (46545116-46545324) | |
| 260-468, gnl|Hg17|chr20 (33055082-33054874) | |
| 260-468, gnl|Mm7|chr2 (155376302-155376094) | |
| 469-579, gnl|bosTau2|chr13 (46545487-46545597) | |
| 469-579, gnl|canFam2|chr24 (27013423-27013562) | |
| 469-579, gnl|danRer3|chr10 (9781763-9781919) | |
| 469-579, gnl|dasNov1|scaffold_196734 (1468-1362) | |
| 469-579, gnl|echTel1|scaffold_309010 (197114-197249) | |
| 469-579, gnl|fr1|chrUn (4060386-4060251) | |
| 469-579, gnl|galGal2|chr20 (2450223-2450095) | |
| 469-579, gnl|hg17|chr20 (33054638-33054773) | |
| 469-579, gnl|Hg17|chr20 (33054747-33054637) | |
| 469-579, gnl|loxAfr1|scaffold_18804 (29269-29404) | |
| 469-579, gnl|mm7|chr2 (155375889-155376024) | |
| 469-579, gnl|Mm7|chr2 (155375998-155375888) | |
| 469-579, gnl|monDom2|scaffold_6 (11959788-11959655) | |
| 469-579, gnl|rheMac2|chr10 (29556487-29556352) | |
| 469-579, gnl|rn3|chr3 (146045855-146045992) | |
| 469-579, gnl|tetNig1|chr11 (9167591-9167456) | |
| 469-579, gnl|xenTro1|scaffold_35 (3142922-3142779) | |
| 1064-1400, gnl|bosTau2|chr13 (46546135-46546474) | |
| 1064-1400, gnl|Hg17|chr20 (33054171-33053873) | |
| 1064-1400, gnl|Mm7|chr2 (155375443-155375141) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cbr (1.0238) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| col (0.195008) | |
| nep (0.183925) | |
| nco (0.161734) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (1.0238) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| col (0.195008) | |
| nep (0.183925) | |
| nco (0.161734) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) | |
| ldo (0.0970026) |