Non-Coding RNA Search

Ss1.1-Mixg-0001d02.5

Sequence:


               
               GCACTGGGAGGCAGCAAGGGCTCCAGCGGCAAGGCGCTCGCACACATCCAGAGAGGGGGT
GGTGGTTTAGAAGAGGGTGGTCACCAGTGATAAACGCCGAGGCGGGGTGGACAGGACCTG
GGTCTGAGCGCTTGTCAGTCTGCCCTGCAGAGGGAGCCTGTCCATCAGACTCCTGGCCCC
AGCACCCCAGCCCAGAGGAGGTGCTTGACATTGGAGGGTGGGCTTGGAGAAGGGGGAGTT
GGGGCGAGGCCCAGGATCAGGACTGGATGGATTCTGGGGGCCCCTGAAAGAAGGATCCTG
GCTGGAGGTCCTCAGAGATCCAGCCCAAACCCTCAGGCCGTCACGCAGAGGGAGAAGCTG
GAGCGCCCTGGCCTGAGGCTGCAGCAGGCTGGTGGCTTGAGTCCTGGGGTCGAAGGAGCA
GGGCCTGGCCACAGAGGCCGGCCCGCACCCCGCCGGCAGGCACCACATACTCCCGGCCAT
CCGTGGCCCTCAAGGGCGAGAAGTCTGTCAACTGCAGGTTGCTGTCCCGGACTTGGTCGT
AGTCCCACAGCTGGTAGTGCCAACTCTTGCCCTGCTTGGAGAGGAGGTAGATGGTGCCTG
TGGAGCCTTCCTCCGGCAGGGCTGGTGGCTGGTGGGGCGAGCTGGCTGCTGGGTGGAACA
GGCCGGGCAGCTCCGGGTCCTCCGCATAGCCGACGTCGGGCACAGCCTGCACACCCAGCA
GCACCCCTGCACTCACTGCCCAGTGGGCCTTGTGGCCCTTCCGCTGACATGGCTCGTGGT
TGAAGTCCTCGTCGTAGGGGATAAGCAGGGGATGTCCGGCGACAAGGTGCAGCAGGACAT
GGTCTCGGTTGGGACTGCCCAGGCCGCCGTGGAGCACCTCTGCCTGGCAGCCCAGTACCT
CCCGGGCCAGCCTGCCCATGTCGGCCACTGAGAACATCTCCCCCTGGGCCGTGTATCTTC
TCTCCACGGCCACCTGCACGAGTCTCTCCAGGGGGATGCCGCTGGGGGGCACCAGGAGAG
TGCCTGCCATCCACAAGGCCACCAGCCCGCACTGAGGGCCTTCCTGGATGAGGGAGGGCA
GGTCGGCACAGAAGAGAATCCACTGCAGGTCACTTCTGAAACGGTCCTTGTGCAGTTTCA
GGAGCCTCTTGACATCCTCTCTGCTCTTGGGGACTGGGCCGGCCCTCTCCAAGGCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACTGGGAGGCAGCAAGGGCTCCAGCGGCAAGGCGCTCGCACACATCCAGAGAGGGGGT
GGTGGTTTAGAAGAGGGTGGTCACCAGTGATAAACGCCGAGGCGGGGTGGACAGGACCTG
GGTCTGAGCGCTTGTCAGTCTGCCCTGCAGAGGGAGCCTGTCCATCAGACTCCTGGCCCC
AGCACCCCAGCCCAGAGGAGGTGCTTGACATTGGAGGGTGGGCTTGGAGAAGGGGGAGTT
GGGGCGAGGCCCAGGATCAGGACTGGATGGATTCTGGGGGCCCCTGAAAGAAGGATCCTG
GCTGGAGGTCCTCAGAGATCCAGCCCAAACCCTCAGGCCGTCACGCAGAGGGAGAAGCTG
GAGCGCCCTGGCCTGAGGCTGCAGCAGGCTGGTGGCTTGAGTCCTGGGGTCGAAGGAGCA
GGGCCTGGCCACAGAGGCCGGCCCGCACCCCGCCGGCAGGCACCACATACTCCCGGCCAT
CCGTGGCCCTCAAGGGCGAGAAGTCTGTCAACTGCAGGTTGCTGTCCCGGACTTGGTCGT
AGTCCCACAGCTGGTAGTGCCAACTCTTGCCCTGCTTGGAGAGGAGGTAGATGGTGCCTG
TGGAGCCTTCCTCCGGCAGGGCTGGTGGCTGGTGGGGCGAGCTGGCTGCTGGGTGGAACA
GGCCGGGCAGCTCCGGGTCCTCCGCATAGCCGACGTCGGGCACAGCCTGCACACCCAGCA
GCACCCCTGCACTCACTGCCCAGTGGGCCTTGTGGCCCTTCCGCTGACATGGCTCGTGGT
TGAAGTCCTCGTCGTAGGGGATAAGCAGGGGATGTCCGGCGACAAGGTGCAGCAGGACAT
GGTCTCGGTTGGGACTGCCCAGGCCGCCGTGGAGCACCTCTGCCTGGCAGCCCAGTACCT
CCCGGGCCAGCCTGCCCATGTCGGCCACTGAGAACATCTCCCCCTGGGCCGTGTATCTTC
TCTCCACGGCCACCTGCACGAGTCTCTCCAGGGGGATGCCGCTGGGGGGCACCAGGAGAG
TGCCTGCCATCCACAAGGCCACCAGCCCGCACTGAGGGCCTTCCTGGATGAGGGAGGGCA
GGTCGGCACAGAAGAGAATCCACTGCAGGTCACTTCTGAAACGGTCCTTGTGCAGTTTCA
GGAGCCTCTTGACATCCTCTCTGCTCTTGGGGACTGGGCCGGCCCTCTCCAAGGCCTCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57038067|ref|XP_541611.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57038067|ref|XP_541611.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               139-476, + strand, RNAz p=0.974542
               

               
               833-930, - strand, RNAz p=0.54645

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-476, + strand, RNAz p=0.974542
               

               
               833-930, - strand, RNAz p=0.54645

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               101-729, gnl|bosTau2|chr18 (45451692-45452314)
               

               
               101-729, gnl|Hg17|chr19 (45939964-45940516)
               


               
               795-930, gnl|bosTau2|chr18 (45453246-45453381)
               

               
               795-930, gnl|canFam2|chr1 (115943510-115943351)
               

               
               795-930, gnl|danRer3|chr10 (29733645-29733774)
               

               
               795-930, gnl|dasNov1|scaffold_3567 (73571-73734)
               

               
               795-930, gnl|fr1|chrUn (183715024-183714882)
               

               
               795-930, gnl|hg17|chr19 (45941808-45941969)
               

               
               795-930, gnl|Hg17|chr19 (45941809-45941944)
               

               
               795-930, gnl|loxAfr1|scaffold_87847 (5884-5723)
               

               
               795-930, gnl|mm7|chr7 (24121402-24121241)
               

               
               795-930, gnl|Mm7|chr7 (24121399-24121264)
               

               
               795-930, gnl|monDom2|scaffold_149 (368427-368580)
               

               
               795-930, gnl|oryCun1|scaffold_104004 (6604-6449)
               

               
               795-930, gnl|panTro1|chr20 (42902354-42902515)
               

               
               795-930, gnl|rheMac2|chr19 (47108923-47109084)
               

               
               795-930, gnl|rn3|chr1 (82358598-82358437)
               

               
               795-930, gnl|tetNig1|chr16 (1818161-1818015)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-729, gnl|bosTau2|chr18 (45451692-45452314)
               

               
               101-729, gnl|Hg17|chr19 (45939964-45940516)
               


               
               795-930, gnl|bosTau2|chr18 (45453246-45453381)
               

               
               795-930, gnl|canFam2|chr1 (115943510-115943351)
               

               
               795-930, gnl|danRer3|chr10 (29733645-29733774)
               

               
               795-930, gnl|dasNov1|scaffold_3567 (73571-73734)
               

               
               795-930, gnl|fr1|chrUn (183715024-183714882)
               

               
               795-930, gnl|hg17|chr19 (45941808-45941969)
               

               
               795-930, gnl|Hg17|chr19 (45941809-45941944)
               

               
               795-930, gnl|loxAfr1|scaffold_87847 (5884-5723)
               

               
               795-930, gnl|mm7|chr7 (24121402-24121241)
               

               
               795-930, gnl|Mm7|chr7 (24121399-24121264)
               

               
               795-930, gnl|monDom2|scaffold_149 (368427-368580)
               

               
               795-930, gnl|oryCun1|scaffold_104004 (6604-6449)
               

               
               795-930, gnl|panTro1|chr20 (42902354-42902515)
               

               
               795-930, gnl|rheMac2|chr19 (47108923-47109084)
               

               
               795-930, gnl|rn3|chr1 (82358598-82358437)
               

               
               795-930, gnl|tetNig1|chr16 (1818161-1818015)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	139-476, + strand, RNAz p=0.974542
	833-930, - strand, RNAz p=0.54645

	101-729, gnl\|bosTau2\|chr18 (45451692-45452314)
	101-729, gnl\|Hg17\|chr19 (45939964-45940516)

	795-930, gnl\|bosTau2\|chr18 (45453246-45453381)
	795-930, gnl\|canFam2\|chr1 (115943510-115943351)
	795-930, gnl\|danRer3\|chr10 (29733645-29733774)
	795-930, gnl\|dasNov1\|scaffold_3567 (73571-73734)
	795-930, gnl\|fr1\|chrUn (183715024-183714882)
	795-930, gnl\|hg17\|chr19 (45941808-45941969)
	795-930, gnl\|Hg17\|chr19 (45941809-45941944)
	795-930, gnl\|loxAfr1\|scaffold_87847 (5884-5723)
	795-930, gnl\|mm7\|chr7 (24121402-24121241)
	795-930, gnl\|Mm7\|chr7 (24121399-24121264)
	795-930, gnl\|monDom2\|scaffold_149 (368427-368580)
	795-930, gnl\|oryCun1\|scaffold_104004 (6604-6449)
	795-930, gnl\|panTro1\|chr20 (42902354-42902515)
	795-930, gnl\|rheMac2\|chr19 (47108923-47109084)
	795-930, gnl\|rn3\|chr1 (82358598-82358437)
	795-930, gnl\|tetNig1\|chr16 (1818161-1818015)