Non-Coding RNA Search

Ss1.1-Mixg-0001d04.5

Sequence:


               
               AGAAGACGACAAAGAGGAAAGCGAGGAGGAGCTCATCTTTACAGAAAGTAACAGTGAGGT
TTCTGAAGAGGTGTATACAGAAGAGGAGGAAGAAGAGGAGGAGGAGGACGATGACGATGA
TAGCGAAGAAGAGGAAAGAACAGTTGAAAACGAGAAAGGGATTAACGGAGCTGTACATTA
CGGTAGTGTCAATTCTGACAACGCAAGGCCAAAGACATTTACCAGTCAGATCGAAAACAT
ACAACTGACGAATGGCCACACACCGAGGAACACAGAGTCCCCGGCTGCTGCCACGCACCC
CTGCGGAAACCCTACAGTGATCGAGGATGTTCTGGAAAAGATTAAGAACAACGACCCCGA
CACCACGGAGGTCAACCTGAATAACATCGAGAACATCACGTCGCAGACCCTCGCCCGCTT
CGCTCAGGCCCTCAAGGACAACACAGTGGTGAAGACCTTCAGTCTGGCCAACACGCGCGC
CGACGACAGCGCGGCCACAGCCATCGCGGAGATGCTCCGAGTCAACCAGCACATCACCAA
TGTCAACATCGAGTCCAACTTCATCACGGGCAAGGGCATCCTGGCCATCATGCGGGCCCT
GCAGCACAACACCGTGCTCACGGAGCTTCGCTTCCACAACCAGAGGCACATCATGGGCAG
CCAGGTGGAGATGGAGCTCGTCAAGCTGCTGAGGGAGAACACCACCCTGCTGAGGCTGGG
CTACCACTTCGAGCTCCCAGGACCAAGAATGAGCATGACGAGCCTCCTGACGAGAAACAT
GGATAAGCAGCGGCAGAAGCGGATGCAGGAGCAAAAACAGCAGGAGGGAAGCGAGGGAGG
AGCCACCCTTAGGACCAAAGTCTGGCAGAGAGGAACGCCTGGCTCTTCACCTTACGCATC
TCCCAGGCACTCTCCCTGGTCATCCCCCAAAGTCCCCAAGAAAGTCCAAACGGGGAGGAG
CCGGCCCATGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGACGACAAAGAGGAAAGCGAGGAGGAGCTCATCTTTACAGAAAGTAACAGTGAGGT
TTCTGAAGAGGTGTATACAGAAGAGGAGGAAGAAGAGGAGGAGGAGGACGATGACGATGA
TAGCGAAGAAGAGGAAAGAACAGTTGAAAACGAGAAAGGGATTAACGGAGCTGTACATTA
CGGTAGTGTCAATTCTGACAACGCAAGGCCAAAGACATTTACCAGTCAGATCGAAAACAT
ACAACTGACGAATGGCCACACACCGAGGAACACAGAGTCCCCGGCTGCTGCCACGCACCC
CTGCGGAAACCCTACAGTGATCGAGGATGTTCTGGAAAAGATTAAGAACAACGACCCCGA
CACCACGGAGGTCAACCTGAATAACATCGAGAACATCACGTCGCAGACCCTCGCCCGCTT
CGCTCAGGCCCTCAAGGACAACACAGTGGTGAAGACCTTCAGTCTGGCCAACACGCGCGC
CGACGACAGCGCGGCCACAGCCATCGCGGAGATGCTCCGAGTCAACCAGCACATCACCAA
TGTCAACATCGAGTCCAACTTCATCACGGGCAAGGGCATCCTGGCCATCATGCGGGCCCT
GCAGCACAACACCGTGCTCACGGAGCTTCGCTTCCACAACCAGAGGCACATCATGGGCAG
CCAGGTGGAGATGGAGCTCGTCAAGCTGCTGAGGGAGAACACCACCCTGCTGAGGCTGGG
CTACCACTTCGAGCTCCCAGGACCAAGAATGAGCATGACGAGCCTCCTGACGAGAAACAT
GGATAAGCAGCGGCAGAAGCGGATGCAGGAGCAAAAACAGCAGGAGGGAAGCGAGGGAGG
AGCCACCCTTAGGACCAAAGTCTGGCAGAGAGGAACGCCTGGCTCTTCACCTTACGCATC
TCCCAGGCACTCTCCCTGGTCATCCCCCAAAGTCCCCAAGAAAGTCCAAACGGGGAGGAG
CCGGCCCATGTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61874084|ref|XP_599281.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874084|ref|XP_599281.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-966, gnl|bosTau2|chr24 (7258636-7259598)
               

               
               1-966, gnl|Hg17|chr7 (122895870-122896832)
               

               
               1-966, gnl|Mm7|chr6 (24546572-24547555)
               


               
               299-826, gnl|bosTau2|chr22 (23449901-23450428)
               

               
               299-826, gnl|Hg17|chr3 (69251496-69250969)
               

               
               299-826, gnl|Mm7|chr6 (97336207-97335680)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-966, gnl|bosTau2|chr24 (7258636-7259598)
               

               
               1-966, gnl|Hg17|chr7 (122895870-122896832)
               

               
               1-966, gnl|Mm7|chr6 (24546572-24547555)
               


               
               299-826, gnl|bosTau2|chr22 (23449901-23450428)
               

               
               299-826, gnl|Hg17|chr3 (69251496-69250969)
               

               
               299-826, gnl|Mm7|chr6 (97336207-97335680)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ldo (0.582016)
               

               
               ste (0.270416)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.582016)
               

               
               ste (0.270416)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)

	1-966, gnl\|bosTau2\|chr24 (7258636-7259598)
	1-966, gnl\|Hg17\|chr7 (122895870-122896832)
	1-966, gnl\|Mm7\|chr6 (24546572-24547555)

	299-826, gnl\|bosTau2\|chr22 (23449901-23450428)
	299-826, gnl\|Hg17\|chr3 (69251496-69250969)
	299-826, gnl\|Mm7\|chr6 (97336207-97335680)

	ldo (0.582016)
	ste (0.270416)
	tbr (0.154178)
	hlv (0.139256)
	ssp (0.13552)
	eru (0.120048)