Non-Coding RNA Search

Ss1.1-Mixg-0001d08.3

Sequence:


               
               AATCAACAAACAGCGAATGTCTAAACAACCTCTGAAACCCTGTTCCTGTTTGCTGGATAC
ATTTGCCTTAGGAGAAAGCAAGGAAGCAAGCCAGGTATTATACTGAACGGGGGCGGGGGG
AGGGGGGGAGCCGGCAAAAGAAAACACCCAATAATCATTGCTGCTTAGCAAACTTGTTTC
AAGACTCGGTAACAAAGGAATATCTATCTGTATAAGAGAACATGGAAGGAGGGATAGTTA
AGAAAGAGAAAGGCAAAGGGCTGTATACTAAGGAGGCGCGCTGTCACACTCTCAACCACC
CCAGAGAAACAGGTTTCCCAGAAACCATGGGTGAACAAGGATGGGGGAGTTCAGCATCCC
CGGCCCCAAAGTCGGAGTGCATCACACCTGACCTGTCAGCGCCTTCCCAAAGGAGCGGAT
TTCCAAAAGGAGGGCCTTCTTCTGTTCCCACCCATCGAGGGAATAATGCCAGCAGCGCAA
AGTGCACATCCCCAGGAAACCGAGATGCCGAGCGGAACACAAATACCCATAGAGCCCCTT
CTGGGAAAGTGCTTCCAGAATCTTCTTAACACCACTGCTGCCTCCCCCTCCCCGTTCTTT
GACTTCAGACCAGAGGGTGAAAACAGAGGGCTGAAGAAAACCGGCAGGGCCCCCCTCCAG
CGCTCGACGCATGAAGGCCCAGGTGCGCCAGGTGCGCCCCAAGGCGGGGGGGAAGGGGTG
AGGGGGAAGGTGGGCTCCCGGCGCCCTGCGGGGCGCAGTGGAACCGCCCGGGGAGGAGGC
GCCTCCGGGAGTTGGCGGTGGGTGATAGGTGGGTCCCTTACGGTCTCCCTCAGCTTCCTC
TCGTAGTCCAGCTCGCGCTGCAGGGTGCCCGCGCGCTCCTCCGCGGCGTCCGCCTGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCAACAAACAGCGAATGTCTAAACAACCTCTGAAACCCTGTTCCTGTTTGCTGGATAC
ATTTGCCTTAGGAGAAAGCAAGGAAGCAAGCCAGGTATTATACTGAACGGGGGCGGGGGG
AGGGGGGGAGCCGGCAAAAGAAAACACCCAATAATCATTGCTGCTTAGCAAACTTGTTTC
AAGACTCGGTAACAAAGGAATATCTATCTGTATAAGAGAACATGGAAGGAGGGATAGTTA
AGAAAGAGAAAGGCAAAGGGCTGTATACTAAGGAGGCGCGCTGTCACACTCTCAACCACC
CCAGAGAAACAGGTTTCCCAGAAACCATGGGTGAACAAGGATGGGGGAGTTCAGCATCCC
CGGCCCCAAAGTCGGAGTGCATCACACCTGACCTGTCAGCGCCTTCCCAAAGGAGCGGAT
TTCCAAAAGGAGGGCCTTCTTCTGTTCCCACCCATCGAGGGAATAATGCCAGCAGCGCAA
AGTGCACATCCCCAGGAAACCGAGATGCCGAGCGGAACACAAATACCCATAGAGCCCCTT
CTGGGAAAGTGCTTCCAGAATCTTCTTAACACCACTGCTGCCTCCCCCTCCCCGTTCTTT
GACTTCAGACCAGAGGGTGAAAACAGAGGGCTGAAGAAAACCGGCAGGGCCCCCCTCCAG
CGCTCGACGCATGAAGGCCCAGGTGCGCCAGGTGCGCCCCAAGGCGGGGGGGAAGGGGTG
AGGGGGAAGGTGGGCTCCCGGCGCCCTGCGGGGCGCAGTGGAACCGCCCGGGGAGGAGGC
GCCTCCGGGAGTTGGCGGTGGGTGATAGGTGGGTCCCTTACGGTCTCCCTCAGCTTCCTC
TCGTAGTCCAGCTCGCGCTGCAGGGTGCCCGCGCGCTCCTCCGCGGCGTCCGCCTGCTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|2119286|pir||I52837

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2119286|pir||I52837

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-900, gnl|bosTau2|chr10 (30891321-30890424)
               

               
               5-900, gnl|Hg17|chr15 (61128793-61127881)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-900, gnl|bosTau2|chr10 (30891321-30890424)
               

               
               5-900, gnl|Hg17|chr15 (61128793-61127881)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               eep (0.122564)

	5-900, gnl\|bosTau2\|chr10 (30891321-30890424)
	5-900, gnl\|Hg17\|chr15 (61128793-61127881)