Ss1.1-Mixg-0001e01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCTGGTGACCTACCGGGAGAACGCGCTGCTGTTTGACCCACAGTCCTCCTCCATCAGC AACAAAGAGCGAGTTGTCACTGTGATTGCTCACGAGCTGGCCCACCAGTGGTTTGGCAAC CTGGTGACCCTGGCCTGGTGGAATGACCTGTGGCTGAATGAGGGCTTTGCCTCCTATGTG GAGTACCTGGGTGCTGACCACGCAGAGCCCACCTGGAATCTGAAAGACCTCATCGTGCCA GGCGACGTGTACCGAGTGATGGCTGTGGATGCTCTGGCTTCCTCCCACCCGCTGACCACC CCTGCTGAGGAGGTCAACACACCTGCCCAGATCAGCGAGATGTTTGACTCCATCTCCTAC AGCAAGGGAGCCTCGGTTATCAGGATGCTCTCCAACTTCCTGACTGAGGACCTGTTCAAG GAGGGCCTGGCGTCCTACTTGCATGCCTTTGCCTATCAGAACACCACCTACCTGGACCTG TGGGAGCACCTGCAGAAGGCTGTGGATGCTCAGACGTCCATCAGGCTGCCAGACACTGTG AGAGCCATCATGGATCGATGGACCCTGCAGATGGGCTTCCCCGTCATCACCGTGGACACC AAGACAGGAAACATCTCACAGAAGCACTTCCTCCTCGACTCCGAATCCAACGTCACCCGC TCCTCAGCGTTCGACTACCTCTGGATTGTTCCCATCTCATCTATTAAAAATGGTGTGATG CAGGATCACTACTGGCTGCGGGATGTTTCCCAAGCCCAGAATGATTTGTTCAAAACCGCA TCGGACGATTGGGTCTTGCTGAACGTCAACGTGACAGGCTATTTCCAGGTGAACTACGAC GAGGACAACTGGAGGATGATTCAGCATCAGCTGCAGACAAACCTGTCGGTCATCCCTGTC ATCAATCGGGCTCAGGTCATCTACGACAGCTTCAACCTGGCCACTGCCCACATGGTCCCT GTCACCCTGGCTCTGGACAACACCCTCTTCCTGAACGGAGAGAAAGAGTACATGCCCTGG CAGGCCGCCCTGAGCAGCCTGAGCTACTTCAGCCTCATGTTCGACCGCTCCGAGGTCTAT GGCCCCATGAAGAAATACCTCAGGAAGCAGGTCGAACCCCTCTTCCAACATTTCGAAACT CTCACTAAAAACTGGACCGAGCGCCCAGAAAATCTGATGGACCAGTACAGTGAGATTAAT GCCATCAGCACTGCCTGCTCCAATGGATTGCCTCAATGTGAGAATCTGGCCAAGACCCTT TTCGACCAGTGGATGAGCGACCCAGAAAATAACCCGATCCACCCCAACCTGCGGTCCACC ATCTACTGCAATGCCATAGCCCAGGGCGGCCAGGACCAGTGGGACTTTGCCTGGGGGCAG TTACAACAAGCCCAGCTGGTAAATGAGGCCGACAAACTCCGCTCAGCGCTGGCCTGCAGC AACGAGGTCTGGCTCCTGAACAGGTACCTGGGTTACACCCTGAACCCGGACCTCATTCGG AAGCAAGACGCCACCTCCACTATTAACAGCATTGCCAGCAATGTCATCGGGCAGCCTCTG GCCTGGGATTTTGTCCAGAGCAACTGGAAGAAGCTCTTTCAGGACTATGGCGGTGGTTCC TTCTCCTTCTCCAACCTCATCCAGGGTGTGACCCGAAGATTCTCCTCTGAGTTTGAGCTG CAGCAGCTGGAGCAGTTCAAGAAGAACAACATGGATGTGGGCTTCGGCTCCGGCACCCGG GCTCTGGAGCAAGCCCTGGAGAAGACCAAGGCCAACATCAAGTGGGTGAAGGAGAACAAG GAGGTGGTGTTGAATTGGTTCATAGAGCACAGCTAATAGTGCCTGGTCCTTCCCGCCACC TGGCCCCCCGCACAAGATGCCCGCATGTGTCCATCCCAGGGCCCACGGCAGGGCCCATGT TCCTGAAGCCCGAGGCACCTGCGTCCTCCCTTTAGGGACAAAGCCTGTGGCCCATGTTAT CTCCATTCTGCCCTGGGGCCCAATCCAGTTTCTGGTGACCAGACTGTCCAGGTGTCTCCC AGCCACTGCCCCTTGTGCCAACCCCACCCTGGGCCTGGCCCAGGGCCCTTCTCAGGGAAG TCCAGCTCCAAGGCCAGATGAGCAGAAGCCCTTGATGGATGATGGATGGCCTTGAAGAAC TGCCCTCTACCCTCTCTCCCCTTTTTCCATAAAGACCCTGAACCTGAGAATCAACAGGGC ATCAGATCTGTATATTTTTTTCCTAGGAGTAAATGTAAATAAAGGATTTCTAGATGAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCTGGTGACCTACCGGGAGAACGCGCTGCTGTTTGACCCACAGTCCTCCTCCATCAGC AACAAAGAGCGAGTTGTCACTGTGATTGCTCACGAGCTGGCCCACCAGTGGTTTGGCAAC CTGGTGACCCTGGCCTGGTGGAATGACCTGTGGCTGAATGAGGGCTTTGCCTCCTATGTG GAGTACCTGGGTGCTGACCACGCAGAGCCCACCTGGAATCTGAAAGACCTCATCGTGCCA GGCGACGTGTACCGAGTGATGGCTGTGGATGCTCTGGCTTCCTCCCACCCGCTGACCACC CCTGCTGAGGAGGTCAACACACCTGCCCAGATCAGCGAGATGTTTGACTCCATCTCCTAC AGCAAGGGAGCCTCGGTTATCAGGATGCTCTCCAACTTCCTGACTGAGGACCTGTTCAAG GAGGGCCTGGCGTCCTACTTGCATGCCTTTGCCTATCAGAACACCACCTACCTGGACCTG TGGGAGCACCTGCAGAAGGCTGTGGATGCTCAGACGTCCATCAGGCTGCCAGACACTGTG AGAGCCATCATGGATCGATGGACCCTGCAGATGGGCTTCCCCGTCATCACCGTGGACACC AAGACAGGAAACATCTCACAGAAGCACTTCCTCCTCGACTCCGAATCCAACGTCACCCGC TCCTCAGCGTTCGACTACCTCTGGATTGTTCCCATCTCATCTATTAAAAATGGTGTGATG CAGGATCACTACTGGCTGCGGGATGTTTCCCAAGCCCAGAATGATTTGTTCAAAACCGCA TCGGACGATTGGGTCTTGCTGAACGTCAACGTGACAGGCTATTTCCAGGTGAACTACGAC GAGGACAACTGGAGGATGATTCAGCATCAGCTGCAGACAAACCTGTCGGTCATCCCTGTC ATCAATCGGGCTCAGGTCATCTACGACAGCTTCAACCTGGCCACTGCCCACATGGTCCCT GTCACCCTGGCTCTGGACAACACCCTCTTCCTGAACGGAGAGAAAGAGTACATGCCCTGG CAGGCCGCCCTGAGCAGCCTGAGCTACTTCAGCCTCATGTTCGACCGCTCCGAGGTCTAT GGCCCCATGAAGAAATACCTCAGGAAGCAGGTCGAACCCCTCTTCCAACATTTCGAAACT CTCACTAAAAACTGGACCGAGCGCCCAGAAAATCTGATGGACCAGTACAGTGAGATTAAT GCCATCAGCACTGCCTGCTCCAATGGATTGCCTCAATGTGAGAATCTGGCCAAGACCCTT TTCGACCAGTGGATGAGCGACCCAGAAAATAACCCGATCCACCCCAACCTGCGGTCCACC ATCTACTGCAATGCCATAGCCCAGGGCGGCCAGGACCAGTGGGACTTTGCCTGGGGGCAG TTACAACAAGCCCAGCTGGTAAATGAGGCCGACAAACTCCGCTCAGCGCTGGCCTGCAGC AACGAGGTCTGGCTCCTGAACAGGTACCTGGGTTACACCCTGAACCCGGACCTCATTCGG AAGCAAGACGCCACCTCCACTATTAACAGCATTGCCAGCAATGTCATCGGGCAGCCTCTG GCCTGGGATTTTGTCCAGAGCAACTGGAAGAAGCTCTTTCAGGACTATGGCGGTGGTTCC TTCTCCTTCTCCAACCTCATCCAGGGTGTGACCCGAAGATTCTCCTCTGAGTTTGAGCTG CAGCAGCTGGAGCAGTTCAAGAAGAACAACATGGATGTGGGCTTCGGCTCCGGCACCCGG GCTCTGGAGCAAGCCCTGGAGAAGACCAAGGCCAACATCAAGTGGGTGAAGGAGAACAAG GAGGTGGTGTTGAATTGGTTCATAGAGCACAGCTAATAGTGCCTGGTCCTTCCCGCCACC TGGCCCCCCGCACAAGATGCCCGCATGTGTCCATCCCAGGGCCCACGGCAGGGCCCATGT TCCTGAAGCCCGAGGCACCTGCGTCCTCCCTTTAGGGACAAAGCCTGTGGCCCATGTTAT CTCCATTCTGCCCTGGGGCCCAATCCAGTTTCTGGTGACCAGACTGTCCAGGTGTCTCCC AGCCACTGCCCCTTGTGCCAACCCCACCCTGGGCCTGGCCCAGGGCCCTTCTCAGGGAAG TCCAGCTCCAAGGCCAGATGAGCAGAAGCCCTTGATGGATGATGGATGGCCTTGAAGAAC TGCCCTCTACCCTCTCTCCCCTTTTTCCATAAAGACCCTGAACCTGAGAATCAACAGGGC ATCAGATCTGTATATTTTTTTCCTAGGAGTAAATGTAAATAAAGGATTTCTAGATGAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1841-2129, - strand, RNAz p=0.996123 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1841-2129, - strand, RNAz p=0.996123 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 101-222, gnl|bosTau2|chr21 (15432976-15433097) | |
| 101-222, gnl|canFam2|chr3 (55637645-55637783) | |
| 101-222, gnl|danRer3|chrUn (143582832-143582953) | |
| 101-222, gnl|dasNov1|scaffold_1140 (59351-59228) | |
| 101-222, gnl|echTel1|scaffold_278943 (3685-3827) | |
| 101-222, gnl|fr1|chrUn (121997189-121997053) | |
| 101-222, gnl|galGal2|chrUn (32738358-32738494) | |
| 101-222, gnl|hg17|chr15 (88148113-88148251) | |
| 101-222, gnl|Hg17|chr15 (88148245-88148124) | |
| 101-222, gnl|loxAfr1|scaffold_161502 (4031-4179) | |
| 101-222, gnl|mm7|chr7 (75708055-75708187) | |
| 101-222, gnl|Mm7|chr7 (75708182-75708061) | |
| 101-222, gnl|monDom2|scaffold_45 (10618160-10618029) | |
| 101-222, gnl|oryCun1|scaffold_149861 (2315-2178) | |
| 101-222, gnl|panTro1|chr16 (89077920-89078058) | |
| 101-222, gnl|rheMac2|chr7 (69433897-69434034) | |
| 101-222, gnl|rn3|chr1 (135694226-135694358) | |
| 101-222, gnl|tetNig1|chrUn_random (136929531-136929686) | |
| 101-222, gnl|xenTro1|scaffold_130 (403452-403329) | |
| 490-672, gnl|bosTau2|chr21 (15435327-15435509) | |
| 490-672, gnl|canFam2|chr3 (55635285-55635443) | |
| 490-672, gnl|danRer3|chrUn (143581534-143581682) | |
| 490-672, gnl|fr1|chrUn (121998138-121997985) | |
| 490-672, gnl|galGal2|chrUn (109001064-109000906) | |
| 490-672, gnl|hg17|chr15 (88145662-88145820) | |
| 490-672, gnl|Hg17|chr15 (88145852-88145672) | |
| 490-672, gnl|mm7|chr7 (75705396-75705554) | |
| 490-672, gnl|Mm7|chr7 (75705586-75705406) | |
| 490-672, gnl|monDom2|scaffold_45 (10621899-10621741) | |
| 490-672, gnl|oryCun1|scaffold_149861 (3930-3772) | |
| 490-672, gnl|panTro1|chr16 (89075479-89075637) | |
| 490-672, gnl|rheMac2|chr7 (69431452-69431610) | |
| 490-672, gnl|rn3|chr1 (135691613-135691771) | |
| 490-672, gnl|tetNig1|chrUn_random (136928669-136928826) | |
| 490-672, gnl|xenTro1|scaffold_130 (406738-406582) | |
| 749-880, gnl|bosTau2|chr21 (15437088-15437220) | |
| 749-880, gnl|Hg17|chr15 (88143801-88143669) | |
| 749-880, gnl|Mm7|chr7 (75704600-75704468) | |
| 941-1092, gnl|bosTau2|chr21 (15438689-15438840) | |
| 941-1092, gnl|canFam2|chr3 (55632443-55632578) | |
| 941-1092, gnl|danRer3|chrUn (143578442-143578585) | |
| 941-1092, gnl|echTel1|scaffold_19251 (335-469) | |
| 941-1092, gnl|fr1|chrUn (121999430-121999291) | |
| 941-1092, gnl|galGal2|chr10 (20604303-20604439) | |
| 941-1092, gnl|hg17|chr15 (88141804-88141939) | |
| 941-1092, gnl|Hg17|chr15 (88141961-88141810) | |
| 941-1092, gnl|loxAfr1|scaffold_114804 (624-759) | |
| 941-1092, gnl|mm7|chr7 (75702754-75702889) | |
| 941-1092, gnl|Mm7|chr7 (75702911-75702760) | |
| 941-1092, gnl|monDom2|scaffold_45 (10624886-10624751) | |
| 941-1092, gnl|oryCun1|scaffold_149861 (5427-5292) | |
| 941-1092, gnl|panTro1|chr16 (89071618-89071753) | |
| 941-1092, gnl|rheMac2|chr7 (69427564-69427699) | |
| 941-1092, gnl|rn3|chr1 (135688766-135688901) | |
| 941-1092, gnl|tetNig1|chrUn_random (136926901-136927030) | |
| 941-1092, gnl|xenTro1|scaffold_130 (410932-410797) | |
| 1296-1465, gnl|bosTau2|chr21 (15441356-15441525) | |
| 1296-1465, gnl|canFam2|chr3 (55628060-55628267) | |
| 1296-1465, gnl|danRer3|chrUn (143575353-143575554) | |
| 1296-1465, gnl|dasNov1|scaffold_131882 (2116-2319) | |
| 1296-1465, gnl|fr1|chrUn (122011586-122011406) | |
| 1296-1465, gnl|galGal2|chr10 (20603393-20603596) | |
| 1296-1465, gnl|hg17|chr15 (88136363-88136572) | |
| 1296-1465, gnl|Hg17|chr15 (88136562-88136393) | |
| 1296-1465, gnl|loxAfr1|scaffold_32457 (14176-14384) | |
| 1296-1465, gnl|mm7|chr7 (75695610-75695786) | |
| 1296-1465, gnl|Mm7|chr7 (75695783-75695614) | |
| 1296-1465, gnl|monDom2|scaffold_45 (10629688-10629472) | |
| 1296-1465, gnl|panTro1|chr16 (89066163-89066372) | |
| 1296-1465, gnl|rheMac2|chr7 (69422084-69422293) | |
| 1296-1465, gnl|rn3|chr1 (135683611-135683794) | |
| 1296-1465, gnl|tetNig1|chrUn_random (136926301-136926478) | |
| 1683-2277, gnl|bosTau2|chr21 (15446502-15447114) | |
| 1683-2277, gnl|Hg17|chr15 (88129740-88129130) | |
| 1683-2277, gnl|Mm7|chr7 (75691110-75690532) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 101-222, gnl|bosTau2|chr21 (15432976-15433097) | |
| 101-222, gnl|canFam2|chr3 (55637645-55637783) | |
| 101-222, gnl|danRer3|chrUn (143582832-143582953) | |
| 101-222, gnl|dasNov1|scaffold_1140 (59351-59228) | |
| 101-222, gnl|echTel1|scaffold_278943 (3685-3827) | |
| 101-222, gnl|fr1|chrUn (121997189-121997053) | |
| 101-222, gnl|galGal2|chrUn (32738358-32738494) | |
| 101-222, gnl|hg17|chr15 (88148113-88148251) | |
| 101-222, gnl|Hg17|chr15 (88148245-88148124) | |
| 101-222, gnl|loxAfr1|scaffold_161502 (4031-4179) | |
| 101-222, gnl|mm7|chr7 (75708055-75708187) | |
| 101-222, gnl|Mm7|chr7 (75708182-75708061) | |
| 101-222, gnl|monDom2|scaffold_45 (10618160-10618029) | |
| 101-222, gnl|oryCun1|scaffold_149861 (2315-2178) | |
| 101-222, gnl|panTro1|chr16 (89077920-89078058) | |
| 101-222, gnl|rheMac2|chr7 (69433897-69434034) | |
| 101-222, gnl|rn3|chr1 (135694226-135694358) | |
| 101-222, gnl|tetNig1|chrUn_random (136929531-136929686) | |
| 101-222, gnl|xenTro1|scaffold_130 (403452-403329) | |
| 490-672, gnl|bosTau2|chr21 (15435327-15435509) | |
| 490-672, gnl|canFam2|chr3 (55635285-55635443) | |
| 490-672, gnl|danRer3|chrUn (143581534-143581682) | |
| 490-672, gnl|fr1|chrUn (121998138-121997985) | |
| 490-672, gnl|galGal2|chrUn (109001064-109000906) | |
| 490-672, gnl|hg17|chr15 (88145662-88145820) | |
| 490-672, gnl|Hg17|chr15 (88145852-88145672) | |
| 490-672, gnl|mm7|chr7 (75705396-75705554) | |
| 490-672, gnl|Mm7|chr7 (75705586-75705406) | |
| 490-672, gnl|monDom2|scaffold_45 (10621899-10621741) | |
| 490-672, gnl|oryCun1|scaffold_149861 (3930-3772) | |
| 490-672, gnl|panTro1|chr16 (89075479-89075637) | |
| 490-672, gnl|rheMac2|chr7 (69431452-69431610) | |
| 490-672, gnl|rn3|chr1 (135691613-135691771) | |
| 490-672, gnl|tetNig1|chrUn_random (136928669-136928826) | |
| 490-672, gnl|xenTro1|scaffold_130 (406738-406582) | |
| 749-880, gnl|bosTau2|chr21 (15437088-15437220) | |
| 749-880, gnl|Hg17|chr15 (88143801-88143669) | |
| 749-880, gnl|Mm7|chr7 (75704600-75704468) | |
| 941-1092, gnl|bosTau2|chr21 (15438689-15438840) | |
| 941-1092, gnl|canFam2|chr3 (55632443-55632578) | |
| 941-1092, gnl|danRer3|chrUn (143578442-143578585) | |
| 941-1092, gnl|echTel1|scaffold_19251 (335-469) | |
| 941-1092, gnl|fr1|chrUn (121999430-121999291) | |
| 941-1092, gnl|galGal2|chr10 (20604303-20604439) | |
| 941-1092, gnl|hg17|chr15 (88141804-88141939) | |
| 941-1092, gnl|Hg17|chr15 (88141961-88141810) | |
| 941-1092, gnl|loxAfr1|scaffold_114804 (624-759) | |
| 941-1092, gnl|mm7|chr7 (75702754-75702889) | |
| 941-1092, gnl|Mm7|chr7 (75702911-75702760) | |
| 941-1092, gnl|monDom2|scaffold_45 (10624886-10624751) | |
| 941-1092, gnl|oryCun1|scaffold_149861 (5427-5292) | |
| 941-1092, gnl|panTro1|chr16 (89071618-89071753) | |
| 941-1092, gnl|rheMac2|chr7 (69427564-69427699) | |
| 941-1092, gnl|rn3|chr1 (135688766-135688901) | |
| 941-1092, gnl|tetNig1|chrUn_random (136926901-136927030) | |
| 941-1092, gnl|xenTro1|scaffold_130 (410932-410797) | |
| 1296-1465, gnl|bosTau2|chr21 (15441356-15441525) | |
| 1296-1465, gnl|canFam2|chr3 (55628060-55628267) | |
| 1296-1465, gnl|danRer3|chrUn (143575353-143575554) | |
| 1296-1465, gnl|dasNov1|scaffold_131882 (2116-2319) | |
| 1296-1465, gnl|fr1|chrUn (122011586-122011406) | |
| 1296-1465, gnl|galGal2|chr10 (20603393-20603596) | |
| 1296-1465, gnl|hg17|chr15 (88136363-88136572) | |
| 1296-1465, gnl|Hg17|chr15 (88136562-88136393) | |
| 1296-1465, gnl|loxAfr1|scaffold_32457 (14176-14384) | |
| 1296-1465, gnl|mm7|chr7 (75695610-75695786) | |
| 1296-1465, gnl|Mm7|chr7 (75695783-75695614) | |
| 1296-1465, gnl|monDom2|scaffold_45 (10629688-10629472) | |
| 1296-1465, gnl|panTro1|chr16 (89066163-89066372) | |
| 1296-1465, gnl|rheMac2|chr7 (69422084-69422293) | |
| 1296-1465, gnl|rn3|chr1 (135683611-135683794) | |
| 1296-1465, gnl|tetNig1|chrUn_random (136926301-136926478) | |
| 1683-2277, gnl|bosTau2|chr21 (15446502-15447114) | |
| 1683-2277, gnl|Hg17|chr15 (88129740-88129130) | |
| 1683-2277, gnl|Mm7|chr7 (75691110-75690532) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| jej (6.8256) | |
| ill (6.14574) | |
| nje (1.49328) | |
| duo (1.20961) | |
| eje (0.889504) | |
| cli (0.764059) | |
| fli (0.608643) | |
| nco (0.485201) | |
| elu (0.385356) | |
| nep (0.36785) | |
| cje (0.330469) | |
| pla (0.267344) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| pty (0.142714) | |
| cov (0.132153) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (6.8256) | |
| ill (6.14574) | |
| nje (1.49328) | |
| duo (1.20961) | |
| eje (0.889504) | |
| cli (0.764059) | |
| fli (0.608643) | |
| nco (0.485201) | |
| elu (0.385356) | |
| nep (0.36785) | |
| cje (0.330469) | |
| pla (0.267344) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| pty (0.142714) | |
| cov (0.132153) | |
| cty (0.10408) | |
| nbm (0.0993246) |