Ss1.1-Mixg-0001f07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCATTTTCAGACCCCCAGGGATCGCAGCTGCCTGGGCCGATCTTCAGTTGGCCCGACTG CACACAACGCGACAGCAAAGGATGAACGGAGCTCTGGGAAAGGCGCTGTGTCTGAGGAAT GACACCGTTTTAAAGCAAGCCCTTTCCCTCATAAGGGTCAGAGCTTCGGGAGAGAGTCCC ATCTGTTCTGCAGGTGGCATTCTGCTGAGTACCAGTCGGCATTACAGGTCAAAGCCCACC CATGGCATTGGAAGATACAAGCACCTAGTTAAAGCACAAGAGCCCAAGAAGAAAAAAGGA AAAGTGGAAGTGAGACCCATTAATCTGGGGACAGATTATGAATATGGGGTTTTAAACATT CACCTGATTGCATATGACATGGCCCTGGCAGAAAGTTATGCCCAGTATGTTCACAACCTC TGCAACCATCTCGCCATTAAAGTCGAGGAAAGTTATGCGATGCCCACCAAAACCATGGAG GTGTTGCAGCTGCAGGAGCAAGGCAGCAAAATGTTCCTGGACGCGGTTCTTACCACCCAT GAGCGAGTGGTTCAGATCAGCGGTTTGAGTGCTACGTTTGCAGAGATCTTCTTGGAAATC ATCCACAGTAATCTTCCTGAAGGAGTCAAATTGTCAGTGAGGGAGCACACGGAAGAAGAC TTCAAGGGAAGGTTCAAAGCTCGGCCAGAACTGGAAGAACTGTTAGCCAAGTTGAACTAG CTCATTGCACCCGTTGCATGCCAGCACTGTGTCAGGGAGTGTCAGGGAGAAGAGCTTCCT TGGCGGCCCAAGTTAAGCAGGAGACTCTAACCTTGTTGTCATAAATTCCCATCTCCACAG CCAGGAATGCCTCCTCGCTTGTGTGGAGGAGTGCCTGCCAATTGTCACCACTTCCCTTAG AGCCAACCCTAGTATCCTCCACCGAATAAAATCTGCTGCTGCTAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCATTTTCAGACCCCCAGGGATCGCAGCTGCCTGGGCCGATCTTCAGTTGGCCCGACTG CACACAACGCGACAGCAAAGGATGAACGGAGCTCTGGGAAAGGCGCTGTGTCTGAGGAAT GACACCGTTTTAAAGCAAGCCCTTTCCCTCATAAGGGTCAGAGCTTCGGGAGAGAGTCCC ATCTGTTCTGCAGGTGGCATTCTGCTGAGTACCAGTCGGCATTACAGGTCAAAGCCCACC CATGGCATTGGAAGATACAAGCACCTAGTTAAAGCACAAGAGCCCAAGAAGAAAAAAGGA AAAGTGGAAGTGAGACCCATTAATCTGGGGACAGATTATGAATATGGGGTTTTAAACATT CACCTGATTGCATATGACATGGCCCTGGCAGAAAGTTATGCCCAGTATGTTCACAACCTC TGCAACCATCTCGCCATTAAAGTCGAGGAAAGTTATGCGATGCCCACCAAAACCATGGAG GTGTTGCAGCTGCAGGAGCAAGGCAGCAAAATGTTCCTGGACGCGGTTCTTACCACCCAT GAGCGAGTGGTTCAGATCAGCGGTTTGAGTGCTACGTTTGCAGAGATCTTCTTGGAAATC ATCCACAGTAATCTTCCTGAAGGAGTCAAATTGTCAGTGAGGGAGCACACGGAAGAAGAC TTCAAGGGAAGGTTCAAAGCTCGGCCAGAACTGGAAGAACTGTTAGCCAAGTTGAACTAG CTCATTGCACCCGTTGCATGCCAGCACTGTGTCAGGGAGTGTCAGGGAGAAGAGCTTCCT TGGCGGCCCAAGTTAAGCAGGAGACTCTAACCTTGTTGTCATAAATTCCCATCTCCACAG CCAGGAATGCCTCCTCGCTTGTGTGGAGGAGTGCCTGCCAATTGTCACCACTTCCCTTAG AGCCAACCCTAGTATCCTCCACCGAATAAAATCTGCTGCTGCTAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 320-439, - strand, RNAz p=0.730137 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 320-439, - strand, RNAz p=0.730137 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 281-457, gnl|bosTau2|chr15 (42161052-42161228) | |
| 281-457, gnl|canFam2|chr21 (27409104-27408919) | |
| 281-457, gnl|canFam2|chr8 (21722822-21722656) | |
| 281-457, gnl|danRer3|chr10 (33116325-33116508) | |
| 281-457, gnl|danRer3|chr10 (33116503-33116340) | |
| 281-457, gnl|dasNov1|scaffold_53121 (235-70) | |
| 281-457, gnl|dasNov1|scaffold_53121 (75-240) | |
| 281-457, gnl|echTel1|scaffold_307016 (39630-39457) | |
| 281-457, gnl|echTel1|scaffold_309707 (53548-53366) | |
| 281-457, gnl|fr1|chrUn (82370753-82370569) | |
| 281-457, gnl|hg17|chr11 (73233490-73233675) | |
| 281-457, gnl|Hg17|chr11 (73233498-73233674) | |
| 281-457, gnl|hg17|chr6 (10568394-10568562) | |
| 281-457, gnl|loxAfr1|scaffold_1229 (44002-44186) | |
| 281-457, gnl|loxAfr1|scaffold_31622 (37794-37626) | |
| 281-457, gnl|mm7|chr4 (88003170-88003341) | |
| 281-457, gnl|mm7|chr7 (96606178-96605990) | |
| 281-457, gnl|Mm7|chr7 (96606165-96605989) | |
| 281-457, gnl|monDom2|scaffold_74 (3630028-3629843) | |
| 281-457, gnl|oryCun1|scaffold_201631 (31759-31944) | |
| 281-457, gnl|oryCun1|scaffold_214778 (43993-43822) | |
| 281-457, gnl|panTro1|chr5 (10835402-10835570) | |
| 281-457, gnl|panTro1|chr9 (74519390-74519575) | |
| 281-457, gnl|rheMac2|chr14 (72010319-72010504) | |
| 281-457, gnl|rheMac2|chr4 (10393322-10393490) | |
| 281-457, gnl|rn3|chr1 (158074007-158073822) | |
| 281-457, gnl|rn3|chr16 (45630403-45630242) | |
| 281-457, gnl|tetNig1|chrUn_random (22208785-22208964) | |
| 281-457, gnl|tetNig1|chrUn_random (22208962-22208792) | |
| 644-941, gnl|bosTau2|chr15 (42173641-42173935) | |
| 644-941, gnl|canFam2|chr8 (21723325-21723090) | |
| 644-941, gnl|dasNov1|scaffold_24549 (5967-6185) | |
| 644-941, gnl|echTel1|scaffold_307016 (40033-39836) | |
| 644-941, gnl|Hg17|chr11 (73252987-73253291) | |
| 644-941, gnl|hg17|chr6 (10567882-10568125) | |
| 644-941, gnl|loxAfr1|scaffold_31622 (38287-38056) | |
| 644-941, gnl|mm7|chr4 (88002695-88002901) | |
| 644-941, gnl|Mm7|chr7 (96595630-96595369) | |
| 644-941, gnl|oryCun1|scaffold_214778 (44478-44262) | |
| 644-941, gnl|panTro1|chr5 (10834890-10835133) | |
| 644-941, gnl|rheMac2|chr4 (10392805-10393053) | |
| 644-941, gnl|rn3|chr16 (45630846-45630661) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 281-457, gnl|bosTau2|chr15 (42161052-42161228) | |
| 281-457, gnl|canFam2|chr21 (27409104-27408919) | |
| 281-457, gnl|canFam2|chr8 (21722822-21722656) | |
| 281-457, gnl|danRer3|chr10 (33116325-33116508) | |
| 281-457, gnl|danRer3|chr10 (33116503-33116340) | |
| 281-457, gnl|dasNov1|scaffold_53121 (235-70) | |
| 281-457, gnl|dasNov1|scaffold_53121 (75-240) | |
| 281-457, gnl|echTel1|scaffold_307016 (39630-39457) | |
| 281-457, gnl|echTel1|scaffold_309707 (53548-53366) | |
| 281-457, gnl|fr1|chrUn (82370753-82370569) | |
| 281-457, gnl|hg17|chr11 (73233490-73233675) | |
| 281-457, gnl|Hg17|chr11 (73233498-73233674) | |
| 281-457, gnl|hg17|chr6 (10568394-10568562) | |
| 281-457, gnl|loxAfr1|scaffold_1229 (44002-44186) | |
| 281-457, gnl|loxAfr1|scaffold_31622 (37794-37626) | |
| 281-457, gnl|mm7|chr4 (88003170-88003341) | |
| 281-457, gnl|mm7|chr7 (96606178-96605990) | |
| 281-457, gnl|Mm7|chr7 (96606165-96605989) | |
| 281-457, gnl|monDom2|scaffold_74 (3630028-3629843) | |
| 281-457, gnl|oryCun1|scaffold_201631 (31759-31944) | |
| 281-457, gnl|oryCun1|scaffold_214778 (43993-43822) | |
| 281-457, gnl|panTro1|chr5 (10835402-10835570) | |
| 281-457, gnl|panTro1|chr9 (74519390-74519575) | |
| 281-457, gnl|rheMac2|chr14 (72010319-72010504) | |
| 281-457, gnl|rheMac2|chr4 (10393322-10393490) | |
| 281-457, gnl|rn3|chr1 (158074007-158073822) | |
| 281-457, gnl|rn3|chr16 (45630403-45630242) | |
| 281-457, gnl|tetNig1|chrUn_random (22208785-22208964) | |
| 281-457, gnl|tetNig1|chrUn_random (22208962-22208792) | |
| 644-941, gnl|bosTau2|chr15 (42173641-42173935) | |
| 644-941, gnl|canFam2|chr8 (21723325-21723090) | |
| 644-941, gnl|dasNov1|scaffold_24549 (5967-6185) | |
| 644-941, gnl|echTel1|scaffold_307016 (40033-39836) | |
| 644-941, gnl|Hg17|chr11 (73252987-73253291) | |
| 644-941, gnl|hg17|chr6 (10567882-10568125) | |
| 644-941, gnl|loxAfr1|scaffold_31622 (38287-38056) | |
| 644-941, gnl|mm7|chr4 (88002695-88002901) | |
| 644-941, gnl|Mm7|chr7 (96595630-96595369) | |
| 644-941, gnl|oryCun1|scaffold_214778 (44478-44262) | |
| 644-941, gnl|panTro1|chr5 (10834890-10835133) | |
| 644-941, gnl|rheMac2|chr4 (10392805-10393053) | |
| 644-941, gnl|rn3|chr16 (45630846-45630661) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| pan (0.23596) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sto (0.179824) | |
| ill (0.175593) | |
| cki (0.165235) | |
| cag (0.151194) | |
| pty (0.142714) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ldo (0.0970026) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pan (0.23596) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sto (0.179824) | |
| ill (0.175593) | |
| cki (0.165235) | |
| cag (0.151194) | |
| pty (0.142714) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ldo (0.0970026) |