Ss1.1-Mixg-0001f09.5
|
CCAAGGGCCGCGACTACCGCGACAACGCCGAGCTCCCCCACCACGCCAAGCACCGGCCCG
AGGATGCCCCGGTCAGCAGGGCCGCCATGCAGTGAAGTCCCGTGAGCTGCCCGTGAGACG
GGAGCCCAGAGGAGCAGCAGGATGCCGCTGGGACCCTCTCCCGGAACCTCTGTTCACGCC
TCCTACCCAGCTTCCCACCAGGGCTTCGTGTTTTTCAGGAGGGGGGCAGCTTCTGTGGTC
GGCGAGGTGCACTGGCTGCGAAACGTGGCCCTCAGTACTGAGGCTGGAAGGGAAACACAC
CTGACAGCACCAGCACCCCCGCACCCCCGGGCCCCCAGCTTGATCTTGGTACTTGGGACC
CAAGAGCCTCGTTCCGGTCGCCGTTTTGAAGAAAGGAATTCACGTGCTGATGCATGGGTG
GAGATATGAATAATAATAATAATAATATTAATAATAATAGCTGCCCGTATGGAGCACTCA
GCCCTGCCAGGTACCATGCTAAGTGCTTTACGGACATGGTTCGTTGTCTTCCTCAGCCAA
CTAAAACCACATTCCCAGACCCCTCAGTTCGAAACAGGATGTCCTGAGTGGTTTGGACAG
AGCATTAAAAATGAAGGCCAGCGACGTGAGTGGTTAATTTAGGGTACAGTGAGCCTGGCC
TTGTCTAGCTTCCGTGGTGCAGAGTGCTTTAGCTAAAGCCGCAGGGGTCCGCCAGAGCCG
GCGTGGAGCACAGGACTTTCCTAGTTCTTGAGTCGGACGGAGAAAGAAAATCAGCTCCTC
CTCTCCGGTGGACAGATCCAGCTGAGACGGGCGACGCACAGGCCCTCCTCCAGGTGGGCA
GCCACCTCCAGGCCACGGGCTGAGCTGATCCTCCAGAGCCTTATCTCATCCAGCTGGAAG
CGTCTTTGCCTTGTTGCCCCCGAAAGCCAGCTCTCGCCTCCTGCCTGGATGCCCGGGAGG
CCAGGCCTCTCGGTCCCCGGCTCTCAAAGCAACGCAGCCTTTTCTTTTCCGAGCTCTGTG
GCTTTTCGGCCCTGCTTCCTCAGTTACTGGGCGGATAGACTAGTGATGTCTTTTCTTGTG
TGGCTTTTGGATATAACAGAAGTAATGTAGGCAGCCCAGTCCAGCCCATCTCCTGTGTGT
GTGACCAGGAGAAGGGGGACGCGGCCCACATCGCCACATGCGTCGCTCCGTGTGACCAAT
AAATTGTGTCTTTCTCACTCAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCAAGGGCCGCGACTACCGCGACAACGCCGAGCTCCCCCACCACGCCAAGCACCGGCCCG
AGGATGCCCCGGTCAGCAGGGCCGCCATGCAGTGAAGTCCCGTGAGCTGCCCGTGAGACG
GGAGCCCAGAGGAGCAGCAGGATGCCGCTGGGACCCTCTCCCGGAACCTCTGTTCACGCC
TCCTACCCAGCTTCCCACCAGGGCTTCGTGTTTTTCAGGAGGGGGGCAGCTTCTGTGGTC
GGCGAGGTGCACTGGCTGCGAAACGTGGCCCTCAGTACTGAGGCTGGAAGGGAAACACAC
CTGACAGCACCAGCACCCCCGCACCCCCGGGCCCCCAGCTTGATCTTGGTACTTGGGACC
CAAGAGCCTCGTTCCGGTCGCCGTTTTGAAGAAAGGAATTCACGTGCTGATGCATGGGTG
GAGATATGAATAATAATAATAATAATATTAATAATAATAGCTGCCCGTATGGAGCACTCA
GCCCTGCCAGGTACCATGCTAAGTGCTTTACGGACATGGTTCGTTGTCTTCCTCAGCCAA
CTAAAACCACATTCCCAGACCCCTCAGTTCGAAACAGGATGTCCTGAGTGGTTTGGACAG
AGCATTAAAAATGAAGGCCAGCGACGTGAGTGGTTAATTTAGGGTACAGTGAGCCTGGCC
TTGTCTAGCTTCCGTGGTGCAGAGTGCTTTAGCTAAAGCCGCAGGGGTCCGCCAGAGCCG
GCGTGGAGCACAGGACTTTCCTAGTTCTTGAGTCGGACGGAGAAAGAAAATCAGCTCCTC
CTCTCCGGTGGACAGATCCAGCTGAGACGGGCGACGCACAGGCCCTCCTCCAGGTGGGCA
GCCACCTCCAGGCCACGGGCTGAGCTGATCCTCCAGAGCCTTATCTCATCCAGCTGGAAG
CGTCTTTGCCTTGTTGCCCCCGAAAGCCAGCTCTCGCCTCCTGCCTGGATGCCCGGGAGG
CCAGGCCTCTCGGTCCCCGGCTCTCAAAGCAACGCAGCCTTTTCTTTTCCGAGCTCTGTG
GCTTTTCGGCCCTGCTTCCTCAGTTACTGGGCGGATAGACTAGTGATGTCTTTTCTTGTG
TGGCTTTTGGATATAACAGAAGTAATGTAGGCAGCCCAGTCCAGCCCATCTCCTGTGTGT
GTGACCAGGAGAAGGGGGACGCGGCCCACATCGCCACATGCGTCGCTCCGTGTGACCAAT
AAATTGTGTCTTTCTCACTCAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
88-619, gnl|bosTau2|chr3 (80729675-80729129) |
|
88-619, gnl|canFam2|chr25 (47732411-47732837) |
|
88-619, gnl|echTel1|scaffold_201878 (5962-5618) |
|
88-619, gnl|hg17|chr2 (233897324-233897762) |
|
88-619, gnl|Hg17|chr2 (233897347-233897888) |
|
88-619, gnl|loxAfr1|scaffold_1892 (24025-24450) |
|
88-619, gnl|mm7|chr1 (87620380-87620816) |
|
88-619, gnl|Mm7|chr1 (87620404-87620941) |
|
88-619, gnl|monDom2|scaffold_174 (99648-99252) |
|
88-619, gnl|oryCun1|scaffold_210481 (53040-52598) |
|
88-619, gnl|panTro1|chr13 (124631818-124632256) |
|
88-619, gnl|rheMac2|chr12 (97092413-97092854) |
|
88-619, gnl|rn3|chr9 (86864468-86864897) |
| |
|
822-1217, gnl|bosTau2|chr3 (80728852-80728469) |
|
822-1217, gnl|Hg17|chr2 (233898168-233898545) |
|
822-1217, gnl|Mm7|chr1 (87621220-87621591) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
88-619, gnl|bosTau2|chr3 (80729675-80729129) |
|
88-619, gnl|canFam2|chr25 (47732411-47732837) |
|
88-619, gnl|echTel1|scaffold_201878 (5962-5618) |
|
88-619, gnl|hg17|chr2 (233897324-233897762) |
|
88-619, gnl|Hg17|chr2 (233897347-233897888) |
|
88-619, gnl|loxAfr1|scaffold_1892 (24025-24450) |
|
88-619, gnl|mm7|chr1 (87620380-87620816) |
|
88-619, gnl|Mm7|chr1 (87620404-87620941) |
|
88-619, gnl|monDom2|scaffold_174 (99648-99252) |
|
88-619, gnl|oryCun1|scaffold_210481 (53040-52598) |
|
88-619, gnl|panTro1|chr13 (124631818-124632256) |
|
88-619, gnl|rheMac2|chr12 (97092413-97092854) |
|
88-619, gnl|rn3|chr9 (86864468-86864897) |
| |
|
822-1217, gnl|bosTau2|chr3 (80728852-80728469) |
|
822-1217, gnl|Hg17|chr2 (233898168-233898545) |
|
822-1217, gnl|Mm7|chr1 (87621220-87621591) |
|
spl (0.286369) |
|
lnt (0.284616) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fty (0.17584) |
|
cag (0.151194) |
|
cly (0.120642) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
spl (0.286369) |
|
lnt (0.284616) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fty (0.17584) |
|
cag (0.151194) |
|
cly (0.120642) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
