Non-Coding RNA Search

Ss1.1-Mixg-0001g03.3

Sequence:


               
               CACCTGCCGGGGCAGGGCTGTGTGGGCGGGTCGTGGCCGGCGGCCGCCCACCCGGACCTC
ACCGAGCTGGCCTGTCCTCCTCCTCCCCCGCGCCGGTCTGCACTCAGTGCTTGAATGACC
TGCCCCCGCTCTGGCCAAAGAGTTTTCCTCCAGAGACCAGGGGCAGGAGGCGGGGAAGGG
GGTCCCTGCCCGGGAGACCCGGCTTCCAGGGCCCGCCCGCCCGCCGCCCTTAACCCAAGG
TTTACTTGGCCGACCCTGGACCCAGACAAGCCAGTGTCGTCAGGATGTGGAACATATTTG
AGCAGTTTAATGTGGTACCAAACGGAGTCCGAACAGGAGCTGTTCATGGGTGAAGCAGCA
TTTAATGCTGCATATAAAGCAATGCATATTTTTCGAGTTAAAATGCATATATCTACATAG
ATGTGCTTTGCTAAGAAGTTAGGTCTGTTGTAGACCAGAAACCACACATTGTGATTTCTT
GTTTTATTTTTTTCTTAGAGAACATTTCTATTGACAGTAAATATAGTTAATATGTAAATA
ATGTACATATAGATTGATTTCTGGAGTGCTTGTTCTTCATTGTATAGACTCCCACAAGGC
GCATGAAGAAATAGCCTATATTGACATTTTGCTGTAAAGTGAGCAGTAACGTTGCAGGGT
GTGTGGCTGTCAGACTGCAAATAGTGTGTTCATTAAATAAAAACACGCTGTTAAAACAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCTGCCGGGGCAGGGCTGTGTGGGCGGGTCGTGGCCGGCGGCCGCCCACCCGGACCTC
ACCGAGCTGGCCTGTCCTCCTCCTCCCCCGCGCCGGTCTGCACTCAGTGCTTGAATGACC
TGCCCCCGCTCTGGCCAAAGAGTTTTCCTCCAGAGACCAGGGGCAGGAGGCGGGGAAGGG
GGTCCCTGCCCGGGAGACCCGGCTTCCAGGGCCCGCCCGCCCGCCGCCCTTAACCCAAGG
TTTACTTGGCCGACCCTGGACCCAGACAAGCCAGTGTCGTCAGGATGTGGAACATATTTG
AGCAGTTTAATGTGGTACCAAACGGAGTCCGAACAGGAGCTGTTCATGGGTGAAGCAGCA
TTTAATGCTGCATATAAAGCAATGCATATTTTTCGAGTTAAAATGCATATATCTACATAG
ATGTGCTTTGCTAAGAAGTTAGGTCTGTTGTAGACCAGAAACCACACATTGTGATTTCTT
GTTTTATTTTTTTCTTAGAGAACATTTCTATTGACAGTAAATATAGTTAATATGTAAATA
ATGTACATATAGATTGATTTCTGGAGTGCTTGTTCTTCATTGTATAGACTCCCACAAGGC
GCATGAAGAAATAGCCTATATTGACATTTTGCTGTAAAGTGAGCAGTAACGTTGCAGGGT
GTGTGGCTGTCAGACTGCAAATAGTGTGTTCATTAAATAAAAACACGCTGTTAAAACAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               337-575, - strand, RNAz p=0.972939

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               337-575, - strand, RNAz p=0.972939

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               351-574, AJ819092 KN206 Bos sp. cDNA clone C0006014e18, mRNA sequence 
(emb|AJ819092.1|), blast E-value=0, identity=90.62% 
               

               
               351-574, 4064608 BARC 10BOV Bos taurus cDNA clone 10BOV11_E17 3', mRNA 
(gb|CK941206.1|), blast E-value=0, identity=90.62% 
               

               
               351-574, 4070789 BARC 10BOV Bos taurus cDNA clone 10BOV19_G06 3', mRNA 
(gb|CK946297.1|), blast E-value=0, identity=90.62% 
               

               
               351-574, 782914 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX735300.1|), 
blast E-value=0, identity=90.62% 
               

               
               351-574, Hw_loin_20_050629_G11 Bos taurus CF-24-HW loin cDNA library Bos 
(gb|DV798594.1|), blast E-value=0, identity=90.62% 
               

               
               351-574, 001004BEMN037485HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY169944.1|), blast E-value=0, identity=90.62%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               351-574, AJ819092 KN206 Bos sp. cDNA clone C0006014e18, mRNA sequence 
(emb|AJ819092.1|), blast E-value=0, identity=90.62% 
               

               
               351-574, 4064608 BARC 10BOV Bos taurus cDNA clone 10BOV11_E17 3', mRNA 
(gb|CK941206.1|), blast E-value=0, identity=90.62% 
               

               
               351-574, 4070789 BARC 10BOV Bos taurus cDNA clone 10BOV19_G06 3', mRNA 
(gb|CK946297.1|), blast E-value=0, identity=90.62% 
               

               
               351-574, 782914 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CX735300.1|), 
blast E-value=0, identity=90.62% 
               

               
               351-574, Hw_loin_20_050629_G11 Bos taurus CF-24-HW loin cDNA library Bos 
(gb|DV798594.1|), blast E-value=0, identity=90.62% 
               

               
               351-574, 001004BEMN037485HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY169944.1|), blast E-value=0, identity=90.62%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-719, gnl|bosTau2|chr25 (36667270-36666551)
               

               
               3-719, gnl|Hg17|chr7 (5975415-5974647)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-719, gnl|bosTau2|chr25 (36667270-36666551)
               

               
               3-719, gnl|Hg17|chr7 (5975415-5974647)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               cbe (1.19617)
               

               
               cte (0.87822)
               

               
               aor (0.585823)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.19617)
               

               
               cte (0.87822)
               

               
               aor (0.585823)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               sug (0.127291)

	351-574, AJ819092 KN206 Bos sp. cDNA clone C0006014e18, mRNA sequence (emb\|AJ819092.1\|), blast E-value=0, identity=90.62%
	351-574, 4064608 BARC 10BOV Bos taurus cDNA clone 10BOV11_E17 3', mRNA (gb\|CK941206.1\|), blast E-value=0, identity=90.62%
	351-574, 4070789 BARC 10BOV Bos taurus cDNA clone 10BOV19_G06 3', mRNA (gb\|CK946297.1\|), blast E-value=0, identity=90.62%
	351-574, 782914 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CX735300.1\|), blast E-value=0, identity=90.62%
	351-574, Hw_loin_20_050629_G11 Bos taurus CF-24-HW loin cDNA library Bos (gb\|DV798594.1\|), blast E-value=0, identity=90.62%
	351-574, 001004BEMN037485HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY169944.1\|), blast E-value=0, identity=90.62%

	3-719, gnl\|bosTau2\|chr25 (36667270-36666551)
	3-719, gnl\|Hg17\|chr7 (5975415-5974647)

	cbe (1.19617)
	cte (0.87822)
	aor (0.585823)
	mga (0.32041)
	sme (0.305437)
	ski (0.29347)
	csk (0.281492)
	fce (0.271592)
	mgp (0.230681)
	spc (0.226732)
	fcc (0.197785)
	cmu (0.186393)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	rec (0.17307)
	eye (0.170503)
	fco (0.157208)
	che (0.136314)
	ret (0.128733)
	sug (0.127291)