Non-Coding RNA Search

Ss1.1-Mixg-0001h12.3

Sequence:


               
               GGTTTTGTGACGTGAAACATTTATAGTTAGGGTTCTTTAATTCTCAGACCGTGACTGTTC
AATGAACACCAAATAGTGTGCTGATAGAGTTTCAGGTGGTTGAAAACATGTCAAATTGTG
TGTTCAGAACTATCTGACACTACTGTGCCACCCAACCTCGGAATTGAACCGTGATTTTAT
GTCCGAGTCCCTGAGGTCAGATGCTACAGTGACAAAGAGTGACCACTGCCACTTAGGTTA
GAATTCTTAAACATGGAAAGTAGCAAAATTGCCTGGTGTCCGGAGGCCTTTCGTAGTTAG
AGTTTTGCATGACGTTTGAGCACTTCAGTAGGCCGTGCTTTGTCCATCGGCAGTAGTTCC
CATAGGAAATCTGGCGGGATTGGACGACTCTGCTGCTTCGTGTCTTGAGCTCCTGGCTGG
GCAAAGAGACAGGCAAGAAGAGCAGACCGTGTCCAGTCCGGCCAGTGACTTGGCTAGGAG
ATGAGAAGTGATTTGTTAGAGGCTCGAGTTTTTAAGGAACTCTGTTTCTGAAAACTCTTT
CTTACCTAAATCCCAGCAGAGCAATGGTTTTGTTATGGGTGCCGGGAGACACTCACCCTT
GCAGCTTAGCAGGAGGGTGAGCCTGGAGGCCAGCGCTGACAGGAGGAGGCCCGCGAGGCC
GTCCCGGGGCCGTCCCGGCGGGGTGATGTGAGCAATGGCCACTGTGCTTTGGAGAGGGAA
ACCCTTCGTCAACAGGGTGTGTGTTTTCAGAGTTTTCCTGTGTCACCAGTCTCAATTGTT
TGTATTGCACATATATAATAATATTAAGGAATAATTTGTCCTGTTTATAAATTTTACGGG
GAACACAAAGGAGTGGATTTCTCCTGGGATGAAATGGATTCCCCACTGTCGTTATGGCGC
CACAGAAACTCCTTTGCCGGGCCAGTAGGTCATGCTCCGAGGTGTAGCCCTGAGAGCCCG
GAGCCGGCTGGATTCTGAGGACTAAACGGAGCCGTGTGTGGGATGCGCCCGGGACTGGGA
TGTGGCAAGGGAACAGTCGGGCAGAGGGCGTCAGCTTCCTTAGGTCCTGGGCAGGTGTCA
GAGCAAGCTCGGGAGACCAGAAACACCTGCTGTGAATAAAGGTGCCTGAATCCTGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTTTGTGACGTGAAACATTTATAGTTAGGGTTCTTTAATTCTCAGACCGTGACTGTTC
AATGAACACCAAATAGTGTGCTGATAGAGTTTCAGGTGGTTGAAAACATGTCAAATTGTG
TGTTCAGAACTATCTGACACTACTGTGCCACCCAACCTCGGAATTGAACCGTGATTTTAT
GTCCGAGTCCCTGAGGTCAGATGCTACAGTGACAAAGAGTGACCACTGCCACTTAGGTTA
GAATTCTTAAACATGGAAAGTAGCAAAATTGCCTGGTGTCCGGAGGCCTTTCGTAGTTAG
AGTTTTGCATGACGTTTGAGCACTTCAGTAGGCCGTGCTTTGTCCATCGGCAGTAGTTCC
CATAGGAAATCTGGCGGGATTGGACGACTCTGCTGCTTCGTGTCTTGAGCTCCTGGCTGG
GCAAAGAGACAGGCAAGAAGAGCAGACCGTGTCCAGTCCGGCCAGTGACTTGGCTAGGAG
ATGAGAAGTGATTTGTTAGAGGCTCGAGTTTTTAAGGAACTCTGTTTCTGAAAACTCTTT
CTTACCTAAATCCCAGCAGAGCAATGGTTTTGTTATGGGTGCCGGGAGACACTCACCCTT
GCAGCTTAGCAGGAGGGTGAGCCTGGAGGCCAGCGCTGACAGGAGGAGGCCCGCGAGGCC
GTCCCGGGGCCGTCCCGGCGGGGTGATGTGAGCAATGGCCACTGTGCTTTGGAGAGGGAA
ACCCTTCGTCAACAGGGTGTGTGTTTTCAGAGTTTTCCTGTGTCACCAGTCTCAATTGTT
TGTATTGCACATATATAATAATATTAAGGAATAATTTGTCCTGTTTATAAATTTTACGGG
GAACACAAAGGAGTGGATTTCTCCTGGGATGAAATGGATTCCCCACTGTCGTTATGGCGC
CACAGAAACTCCTTTGCCGGGCCAGTAGGTCATGCTCCGAGGTGTAGCCCTGAGAGCCCG
GAGCCGGCTGGATTCTGAGGACTAAACGGAGCCGTGTGTGGGATGCGCCCGGGACTGGGA
TGTGGCAAGGGAACAGTCGGGCAGAGGGCGTCAGCTTCCTTAGGTCCTGGGCAGGTGTCA
GAGCAAGCTCGGGAGACCAGAAACACCTGCTGTGAATAAAGGTGCCTGAATCCTGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               165-1135, gnl|bosTau2|chr18 (11287736-11286771)
               

               
               165-1135, gnl|Hg17|chr16 (82403096-82404096)
               

               
               165-1135, gnl|Mm7|chr8 (117970884-117971761)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-1135, gnl|bosTau2|chr18 (11287736-11286771)
               

               
               165-1135, gnl|Hg17|chr16 (82403096-82404096)
               

               
               165-1135, gnl|Mm7|chr8 (117970884-117971761)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               fcc (0.791139)
               

               
               fbs (0.526039)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               che (0.272628)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.791139)
               

               
               fbs (0.526039)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               che (0.272628)
               

               
               mgp (0.230681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	165-1135, gnl\|bosTau2\|chr18 (11287736-11286771)
	165-1135, gnl\|Hg17\|chr16 (82403096-82404096)
	165-1135, gnl\|Mm7\|chr8 (117970884-117971761)

	fcc (0.791139)
	fbs (0.526039)
	ebs (0.354904)
	fhi (0.339155)
	che (0.272628)
	mgp (0.230681)
	fty (0.17584)
	ill (0.175593)
	eye (0.170503)
	pty (0.142714)
	ssp (0.13552)
	nmm (0.132802)
	cly (0.120642)
	pgl (0.118483)
	ecc (0.115035)
	eje (0.0988338)