Non-Coding RNA Search

Ss1.1-Mixg-0002b05.5

Sequence:


               
               AGATGCTTCGGGTTCACTTCCGGCGTACGTACGCCTCCTCTTGTGCTCGCTTGTTAATGG
CGGGCGGCGGCTGCTGAGTGGGACGCTGAGGACCGCTGCCCGCACAGGAAAAGTCTCCCT
GCCTCCCTCTTTCCGCTCGCTGCTAGTACCGGGAGCTCGCTAGCATGTCTGTGGTGCCGC
CCAATCGCTCGCAGACCGGCTGGCCCCGGGGGGTCAACCAGTATGGCAACAAGTACATCC
AGCAGACCAAGCCCCTCACCCTGGAGCGCACCATCAACCTGTACCCTCTTACCAATTATA
CTTTTGGTACAAAAGAGCCCCTCTATGAGAAGGACAGCTCTGTTGCCGCCAGATTTCAGC
GCATGAGGGAGGAATTTGATAAAATTGGCATGAGGAGGACTGTAGAAGGAGTTTTGATTG
TCCATGAGCACCGGCTACCCCATGTGTTACTGCTTCAGCTGGGAACAACTTTCTTCAAAT
TACCAGGTGGTGAGCTTAACCCAGGAGAAGATGAAGTTGAAGGACTAAAACGCTTAATGA
CAGAGATACTGGGTCGTCAAGATGGAGTCCTGCAAGACTGGGTCATTGATGATTGCATTG
GTAACTGGTGGAGACCAAATTTTGAACCTCCTCAGTATCCATATATTCCTGCACACATTA
CAAAACCTAAGGAACATAAGAAGTTGTTTTTGGTTCAGCTTCAAGAGAAAGCCTTATTCG
CAGTCCCTAAAAATTACAAGCTGGTTGCTGCACCACTGTTTGAACTGTATGACAATGCAC
CCGGATATGGACCCATCATTTCTAGTCTCCCTCAGCTTTTGAGCAGGTTCAATTTTATAT
ACAACTGAATTCCTGCACAGCGGAGAAGTAAGAGAAGCCATCTCTGTGAGCACAGCTATA
CACAGTGTAGAATAAACATGCTAGTAAGGTGTTTTTGGTTTTCTCTTTTTCCCTATCCCT
AAATTGCCACCTCCTTTCTGTTGTTTGAATAGTAAAGTTAATATGAAAAACTAGATTTTG
GTGTAAGCAAATGTGATAATGCTTAATTTACTTTTGTTAAACTACTCATAACTTTTTTAT
ACAACATTAAAGAAAGTGGACTTCTTTCTATTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGCTTCGGGTTCACTTCCGGCGTACGTACGCCTCCTCTTGTGCTCGCTTGTTAATGG
CGGGCGGCGGCTGCTGAGTGGGACGCTGAGGACCGCTGCCCGCACAGGAAAAGTCTCCCT
GCCTCCCTCTTTCCGCTCGCTGCTAGTACCGGGAGCTCGCTAGCATGTCTGTGGTGCCGC
CCAATCGCTCGCAGACCGGCTGGCCCCGGGGGGTCAACCAGTATGGCAACAAGTACATCC
AGCAGACCAAGCCCCTCACCCTGGAGCGCACCATCAACCTGTACCCTCTTACCAATTATA
CTTTTGGTACAAAAGAGCCCCTCTATGAGAAGGACAGCTCTGTTGCCGCCAGATTTCAGC
GCATGAGGGAGGAATTTGATAAAATTGGCATGAGGAGGACTGTAGAAGGAGTTTTGATTG
TCCATGAGCACCGGCTACCCCATGTGTTACTGCTTCAGCTGGGAACAACTTTCTTCAAAT
TACCAGGTGGTGAGCTTAACCCAGGAGAAGATGAAGTTGAAGGACTAAAACGCTTAATGA
CAGAGATACTGGGTCGTCAAGATGGAGTCCTGCAAGACTGGGTCATTGATGATTGCATTG
GTAACTGGTGGAGACCAAATTTTGAACCTCCTCAGTATCCATATATTCCTGCACACATTA
CAAAACCTAAGGAACATAAGAAGTTGTTTTTGGTTCAGCTTCAAGAGAAAGCCTTATTCG
CAGTCCCTAAAAATTACAAGCTGGTTGCTGCACCACTGTTTGAACTGTATGACAATGCAC
CCGGATATGGACCCATCATTTCTAGTCTCCCTCAGCTTTTGAGCAGGTTCAATTTTATAT
ACAACTGAATTCCTGCACAGCGGAGAAGTAAGAGAAGCCATCTCTGTGAGCACAGCTATA
CACAGTGTAGAATAAACATGCTAGTAAGGTGTTTTTGGTTTTCTCTTTTTCCCTATCCCT
AAATTGCCACCTCCTTTCTGTTGTTTGAATAGTAAAGTTAATATGAAAAACTAGATTTTG
GTGTAAGCAAATGTGATAATGCTTAATTTACTTTTGTTAAACTACTCATAACTTTTTTAT
ACAACATTAAAGAAAGTGGACTTCTTTCTATTAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|27658562|ref|XP_214640.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27658562|ref|XP_214640.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-283, gnl|bosTau2|chr18 (23929976-23929695)
               

               
               1-283, gnl|Hg17|chr16 (55042779-55042497)
               

               
               1-283, gnl|Mm7|chr8 (92626096-92625818)
               


               
               756-963, gnl|bosTau2|chr11 (6665013-6664808)
               

               
               756-963, gnl|Hg17|chr16 (55025813-55023984)
               

               
               756-963, gnl|Mm7|chr3 (20789414-20789629)
               


               
               988-1120, gnl|bosTau2|chr11 (6664808-6664678)
               

               
               988-1120, gnl|Hg17|chr16 (55023984-55023869)
               

               
               988-1120, gnl|Mm7|chr3 (20789629-20789737)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-283, gnl|bosTau2|chr18 (23929976-23929695)
               

               
               1-283, gnl|Hg17|chr16 (55042779-55042497)
               

               
               1-283, gnl|Mm7|chr8 (92626096-92625818)
               


               
               756-963, gnl|bosTau2|chr11 (6665013-6664808)
               

               
               756-963, gnl|Hg17|chr16 (55025813-55023984)
               

               
               756-963, gnl|Mm7|chr3 (20789414-20789629)
               


               
               988-1120, gnl|bosTau2|chr11 (6664808-6664678)
               

               
               988-1120, gnl|Hg17|chr16 (55023984-55023869)
               

               
               988-1120, gnl|Mm7|chr3 (20789629-20789737)

Expressed library(ies): 28 entry(ies)

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Expressed library(ies): 28 entry(ies)

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               hea (0.613497)
               

               
               pro (0.512033)
               

               
               thg (0.380373)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.613497)
               

               
               pro (0.512033)
               

               
               thg (0.380373)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-283, gnl\|bosTau2\|chr18 (23929976-23929695)
	1-283, gnl\|Hg17\|chr16 (55042779-55042497)
	1-283, gnl\|Mm7\|chr8 (92626096-92625818)

	756-963, gnl\|bosTau2\|chr11 (6665013-6664808)
	756-963, gnl\|Hg17\|chr16 (55025813-55023984)
	756-963, gnl\|Mm7\|chr3 (20789414-20789629)

	988-1120, gnl\|bosTau2\|chr11 (6664808-6664678)
	988-1120, gnl\|Hg17\|chr16 (55023984-55023869)
	988-1120, gnl\|Mm7\|chr3 (20789629-20789737)

	hea (0.613497)
	pro (0.512033)
	thg (0.380373)
	mgp (0.230681)
	tes (0.207814)
	nlu (0.191681)
	nep (0.183925)
	fty (0.17584)
	fbs (0.175346)
	duo (0.172801)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	cag (0.151194)
	fat (0.147427)
	spl (0.143184)
	lnt (0.142308)
	ste (0.135208)
	pla (0.133672)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	cbl (0.114797)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)