Non-Coding RNA Search

Ss1.1-Mixg-0002c08.3

Sequence:


               
               CGGATCTGTCCCACCCCCCCTGTCTCCACGGTCACCGGCGATTAGAACATTTCTGATAGT
GAGATTGAGCAATACTTGCGTACCCCTCAGGAAGTTAGGGACTTCCAGAAAGCCCAGGCT
GCTGGACAGGCCACCACGAGTGGTCCTAACCCTCCCTGATGCACATCCAGAGTTGGGGCT
GCCTCACCCCGACCTGAGGGCAGGGTGGTGATAGTCCTGACACCTCAGAGAAGTTCGTGT
ATACAAGTCTAGGTATTGTCGTTCTTGTTTCAAGGACCCGAGAGGGGCTCTGCAGTTACT
TGACCCAAGGCCCTGGAGTAGAAGTCAGAAGGAATGCAGGGACATGTGGGTTGGAGGGAG
TCCCATCTCTTGGACTCAGAGAGTGGGTTGCACGTACTCCTGTTCCCAGGCTGGCTTTCC
TCTTGGACTGTTGGGAGAGTGGCAGGGTCACTCCTGCTCCTGGTGTGGCTGCTGTGCTGC
TGGTGGGGCCTCCCTTCTGGTGTGGAGCAGCAGGCATTCCCCCATTTGGAGGACGAGACC
CCAGGCAACCCTTGGCCATGCATCTGTTCACAGGTCTGAGTGGGTTCACGTGTATAGTAT
CAGAGATCCTCTACCTCATAACAGACTGACCGTGGTTGGAGTAAGGTCATAGCTCAAAGG
GCTTTGCAAATTTTTAATATATTAAAACAAGAGGCATCTGCTAGAAAACATTCTATTGTA
TAAAACCGGAGCTTTTAAAAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGATCTGTCCCACCCCCCCTGTCTCCACGGTCACCGGCGATTAGAACATTTCTGATAGT
GAGATTGAGCAATACTTGCGTACCCCTCAGGAAGTTAGGGACTTCCAGAAAGCCCAGGCT
GCTGGACAGGCCACCACGAGTGGTCCTAACCCTCCCTGATGCACATCCAGAGTTGGGGCT
GCCTCACCCCGACCTGAGGGCAGGGTGGTGATAGTCCTGACACCTCAGAGAAGTTCGTGT
ATACAAGTCTAGGTATTGTCGTTCTTGTTTCAAGGACCCGAGAGGGGCTCTGCAGTTACT
TGACCCAAGGCCCTGGAGTAGAAGTCAGAAGGAATGCAGGGACATGTGGGTTGGAGGGAG
TCCCATCTCTTGGACTCAGAGAGTGGGTTGCACGTACTCCTGTTCCCAGGCTGGCTTTCC
TCTTGGACTGTTGGGAGAGTGGCAGGGTCACTCCTGCTCCTGGTGTGGCTGCTGTGCTGC
TGGTGGGGCCTCCCTTCTGGTGTGGAGCAGCAGGCATTCCCCCATTTGGAGGACGAGACC
CCAGGCAACCCTTGGCCATGCATCTGTTCACAGGTCTGAGTGGGTTCACGTGTATAGTAT
CAGAGATCCTCTACCTCATAACAGACTGACCGTGGTTGGAGTAAGGTCATAGCTCAAAGG
GCTTTGCAAATTTTTAATATATTAAAACAAGAGGCATCTGCTAGAAAACATTCTATTGTA
TAAAACCGGAGCTTTTAAAAACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               45-164, - strand, RNAz p=0.660375

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-164, - strand, RNAz p=0.660375

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032777, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032777, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-743, gnl|bosTau2|chr27 (20978766-20978024)
               

               
               5-743, gnl|Hg17|chr8 (37821320-37820556)
               

               
               5-743, gnl|Mm7|chr8 (25879620-25878913)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-743, gnl|bosTau2|chr27 (20978766-20978024)
               

               
               5-743, gnl|Hg17|chr8 (37821320-37820556)
               

               
               5-743, gnl|Mm7|chr8 (25879620-25878913)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)

	5-743, gnl\|bosTau2\|chr27 (20978766-20978024)
	5-743, gnl\|Hg17\|chr8 (37821320-37820556)
	5-743, gnl\|Mm7\|chr8 (25879620-25878913)