Non-Coding RNA Search

Ss1.1-Mixg-0002d04.3

Sequence:


               
               GTTATTGCAGAATATAATATAATCTGTTTTAAGGGGAGAAATTTAAAAGTAGAAGGATTT
CATGCATTTAGGTGAAGGAGCTAACCCCTTGAGTAAATGATTGCTCAGGTTCTTAAAATG
TCCCAAATACCCACCATGGTCATTTTCTCCCCAGTGGTGCACATCTTAAAAGTTCTGTCT
GACCACAGGAATTCAATGGTGGGTATAAAATGAATGAATAAAGAAATTAAGTAACAATTC
ATAAAATGACCAGATGTAGGGATGGTGTTTTAGAGTGTAGTATTAATTTACTCAGTGATA
CCACTCAATAGGGCATGCCACTACTTTTCTTAAGATGCTAATTATAAACCAATGTTCAAA
AGACATTTTTAACTGTGGGCAAATTAGTAGACGGGCTTTTTGGTCTGTCACTTTTTTAAA
AAGTACTTAAAAGTTTTATTAGTACCACAGTCTGCCTTCAGTAATAAACCCTAAAATATT
TTTCAGAACCAGGAGCATTCAGTTGAAAGAAATCTTTTTTATGAGTGCAAAACAGTATTA
CAACTAATGCCCTGGTCAAGATTAGGTTTTTAATGATATTAACAGTAGTCTGATAAACAT
TTAGAAGTCTGGCATTGAGAAACAAAAGCTTGTACCTGACTAGTATTTTTATTTAAAAAA
ATAGTTCTGTTAGCTTATTTAAATTCTCTTAACGTTTATTTATCCTTAGAATTTATATTT
ATTTCATTCCTTTCATCTCACTGAAAACTGTCTGCAGGCTCTTTGATTTGGATTAGATGT
GTGAAGTACTGTCTTTTGCCAAAAACCTCAAATTACTTGTTCTTTTCAACGTAGTGGGTT
TGTGCTTGTTTGGAGATCAGTTCAAAAACTATCTGTACTATCTGTACTGCCTCTGATGTT
AAGATTTTATGTATAGCATAAGGAAGCTAGCTCTGACTATATTTTCCTAAGAATAAAGAC
CTATTTTTGTAGCAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTATTGCAGAATATAATATAATCTGTTTTAAGGGGAGAAATTTAAAAGTAGAAGGATTT
CATGCATTTAGGTGAAGGAGCTAACCCCTTGAGTAAATGATTGCTCAGGTTCTTAAAATG
TCCCAAATACCCACCATGGTCATTTTCTCCCCAGTGGTGCACATCTTAAAAGTTCTGTCT
GACCACAGGAATTCAATGGTGGGTATAAAATGAATGAATAAAGAAATTAAGTAACAATTC
ATAAAATGACCAGATGTAGGGATGGTGTTTTAGAGTGTAGTATTAATTTACTCAGTGATA
CCACTCAATAGGGCATGCCACTACTTTTCTTAAGATGCTAATTATAAACCAATGTTCAAA
AGACATTTTTAACTGTGGGCAAATTAGTAGACGGGCTTTTTGGTCTGTCACTTTTTTAAA
AAGTACTTAAAAGTTTTATTAGTACCACAGTCTGCCTTCAGTAATAAACCCTAAAATATT
TTTCAGAACCAGGAGCATTCAGTTGAAAGAAATCTTTTTTATGAGTGCAAAACAGTATTA
CAACTAATGCCCTGGTCAAGATTAGGTTTTTAATGATATTAACAGTAGTCTGATAAACAT
TTAGAAGTCTGGCATTGAGAAACAAAAGCTTGTACCTGACTAGTATTTTTATTTAAAAAA
ATAGTTCTGTTAGCTTATTTAAATTCTCTTAACGTTTATTTATCCTTAGAATTTATATTT
ATTTCATTCCTTTCATCTCACTGAAAACTGTCTGCAGGCTCTTTGATTTGGATTAGATGT
GTGAAGTACTGTCTTTTGCCAAAAACCTCAAATTACTTGTTCTTTTCAACGTAGTGGGTT
TGTGCTTGTTTGGAGATCAGTTCAAAAACTATCTGTACTATCTGTACTGCCTCTGATGTT
AAGATTTTATGTATAGCATAAGGAAGCTAGCTCTGACTATATTTTCCTAAGAATAAAGAC
CTATTTTTGTAGCAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               387-994, gnl|bosTau2|chr10 (39808273-39807668)
               

               
               387-994, gnl|Hg17|chr6 (86375349-86374771)
               

               
               387-994, gnl|Mm7|chr9 (88551297-88550732)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               387-994, gnl|bosTau2|chr10 (39808273-39807668)
               

               
               387-994, gnl|Hg17|chr6 (86375349-86374771)
               

               
               387-994, gnl|Mm7|chr9 (88551297-88550732)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               mgp (0.461361)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

	387-994, gnl\|bosTau2\|chr10 (39808273-39807668)
	387-994, gnl\|Hg17\|chr6 (86375349-86374771)
	387-994, gnl\|Mm7\|chr9 (88551297-88550732)

	mgp (0.461361)
	tes (0.207814)
	fty (0.17584)
	sin (0.174948)
	mga (0.160205)
	isp (0.150376)
	bfe (0.149858)
	ste (0.135208)
	ova (0.129132)
	ret (0.128733)
	tra (0.123092)
	ecc (0.115035)