Non-Coding RNA Search

Ss1.1-Mixg-0002d05.3

Sequence:


               
               AAATAATTCTAAACATACATTTGAAAGGTCTTAGGTCTGTTTTCGGAAGAGTCAAGAATT
TTAAGTAGAGTCCCTCTCACCGCACCCACCACCCCAAAGTAAAACAAATGTTATTCTGTA
AAATGAAATAGAGTTTATCTACTTTCCCCCTGATGTTCCTTTTAGGGTAACTCAAACTCT
CTCAGCATTAATTAGAGCAATCCCAGAAGGGGGTAGACTCCTGCTCTCAGTCTGCCAGCT
TCTTGCTGCAGCCTCCTAGGCCCCTACTGGGGAGCCCAAGATCTCTAGGTTTTCTTTATA
ATTAATAATGTCATTTTTGCAATGAGCAAAGCCATGTCCTTGATCTTGGTGCATTAGACT
TGGCAAGTAAAGTCAGTACATTTTGCAGAGAGCCAAGTGTATGTAGAGGAATGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGAATAGTTGAGACATAAAATCTTTTCATTTTGGAGCACCT
TACCAAACATCGATAATCCACCACCTCATCCTTTGGCAACACTGCAAAGATTGCATCTGT
TACACAGGTACAGGTTCACTTGAGGTCAGTTTAATTGTACACCATGGTATTGGTGGTGTT
TATGCTGTTTAGTCCAAACCTTTATCTGTTATTCTTAATGTTTAATAAACTTTGAATTGT
TAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATAATTCTAAACATACATTTGAAAGGTCTTAGGTCTGTTTTCGGAAGAGTCAAGAATT
TTAAGTAGAGTCCCTCTCACCGCACCCACCACCCCAAAGTAAAACAAATGTTATTCTGTA
AAATGAAATAGAGTTTATCTACTTTCCCCCTGATGTTCCTTTTAGGGTAACTCAAACTCT
CTCAGCATTAATTAGAGCAATCCCAGAAGGGGGTAGACTCCTGCTCTCAGTCTGCCAGCT
TCTTGCTGCAGCCTCCTAGGCCCCTACTGGGGAGCCCAAGATCTCTAGGTTTTCTTTATA
ATTAATAATGTCATTTTTGCAATGAGCAAAGCCATGTCCTTGATCTTGGTGCATTAGACT
TGGCAAGTAAAGTCAGTACATTTTGCAGAGAGCCAAGTGTATGTAGAGGAATGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGAATAGTTGAGACATAAAATCTTTTCATTTTGGAGCACCT
TACCAAACATCGATAATCCACCACCTCATCCTTTGGCAACACTGCAAAGATTGCATCTGT
TACACAGGTACAGGTTCACTTGAGGTCAGTTTAATTGTACACCATGGTATTGGTGGTGTT
TATGCTGTTTAGTCCAAACCTTTATCTGTTATTCTTAATGTTTAATAAACTTTGAATTGT
TAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-661, gnl|bosTau2|chr19 (1076108-1075458)
               

               
               5-661, gnl|Hg17|chr17 (50756664-50757418)
               

               
               5-661, gnl|Mm7|chr11 (90446357-90445582)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-661, gnl|bosTau2|chr19 (1076108-1075458)
               

               
               5-661, gnl|Hg17|chr17 (50756664-50757418)
               

               
               5-661, gnl|Mm7|chr11 (90446357-90445582)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

	5-661, gnl\|bosTau2\|chr19 (1076108-1075458)
	5-661, gnl\|Hg17\|chr17 (50756664-50757418)
	5-661, gnl\|Mm7\|chr11 (90446357-90445582)

	cbe (0.239234)
	spc (0.226732)
	sag (0.182715)
	gul (0.177588)
	cki (0.165235)
	ret (0.128733)
	tra (0.123092)
	jca (0.11396)