Non-Coding RNA Search

Ss1.1-Mixg-0002h02.5

Sequence:


               
               GCCCCGGGGAGAGGATGGAAGGGGTGCTGGGGGGCCTGTGGAGTCCCAGAGCAGAATGAG
CGGCCGGACCCCCGCCTCTCGGCCCCCTGGCTCCGCTGGCCCTGGAGGGCGGGGCTGGTG
AGGAGGCGAGAATGTGGACGTTCGTCACCCAGCTCCTCGTCACCCTGGTGCTGCTGGGCT
TCTTCCTGGTCAGCTGCCAGAACGTGATGCACATTGTCCGGGGCTCTCTGTGCTTCGTGC
TGAAGCACATCCACCAGGAGCTGGACAAGGAGCTGGGGGAGAACGAGGGCCTGAGCGACG
ACGAGGAGGCCATCTCCACCAGGGTGGTGCGGCGCCGGGTCCTTCGGAAGGGGAATGAGT
TTCTTCAGAATATTCCAGGGGAGCAGGTGTCAGAGGAGCATTACACGGATGAGCAGGGCA
ATGTCGTCACCAGGAAGGTCATCCGCAAAGTTGTTCGCCAGATAGACCCGTCCGGAGCCG
ATGACACCCAGGAGCACGAGGAGGTGGAGCTGAGAGGGAACAGCCTTCACCCAGACCTGA
TAGAGGGCAGGAAGGGGGCACAGATAGTGAAGCGGGCCAGCCTCAAAAGGGGGAAGCAGT
GATCTCAAGCCCCTCCCTGTCGAATGGCCTCTCTGGAGGATCACACGTCGACACCCAACC
CTTGAACTCCACACACTCTGCCACGCACCCAGGAGGAGAGCTGGCCCGGAGGCCCCGGAA
GCAGCACACACGTCCCCCCGGAGGCTGACGGCATGACCTCTGTAAGGGACTTCCTTTAGT
CACCTACTCGCATGAAGGACTGACTGTAGACGCATGACCTGCAGTCCTCAATCCTGCCTC
TAGGACTGTGGAGCTCTGTTGGGAATCAGGACAGGATGAAGCCGCCCGAGCAGAGAGAGA
GAGAGAGGGACGCGAGGGCGCAGGAGAGCGCTGAGCGCAACAGCAAACAAGGGCTCTTTT
GTGGCTGGGATGAGATATTTTTTTAAATCATTTCAATTTCGACGTGTTACAGGGTACTTT
TTTTTCAACCTCATCTGTAGGAAATCCATGTGAGCTTCCTGGAAAGGAAAAACAAAAAAA
AAACAAACAAAAAAAAGAACAAGAACCAATTCAGCCCCTTAATCCCTTGTCCTCGTCTGC
CAGCCTTCCCCACCCGTACGCCCCACCCACCATTTATGACCGTCCCTTCCGATCCCCAGT
GGACTGAACCTTCCAGGACGCTCTACATGGCATCAGGACACACACACACGCGCACAGGCA
CATACACCCTCTCCCCTCTACTTAGTATACACACACAGATTTTACTGTGACGTCTGAAGC
TGTGTAGACTCTCCTGTGGATAAACTGGAATTTTTTTTATGTTGTCTCTCTCTCTCTCCG
CCAGTTTCAGTATCAATCATCTTCCAATGGAAAATCATCACCTTTAGAGTGCATTCGGGG
TTCCTTGTGTTAGGGACATAAGAATTGAGGCGAGGACCCCCCCAGGCTTAGCTGTAGGGC
TCCAAGGGAGCCGGCGCCCCCATCTGAAAGGGTCTTGCAGCTGGGGGAGGGCCGGTGGCT
GTCCCAGGATTGCACCAGCATGTTCAATAGAGAAGAGGTTTTCTATATCTTCAAGCACTT
ATATCATAGTCCGTGTTCAAAGTGTAAACTCTGCAGTAATCAGCCTTGTGTATATGACAA
ACAATAAATACTATGCAAACCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCGGGGAGAGGATGGAAGGGGTGCTGGGGGGCCTGTGGAGTCCCAGAGCAGAATGAG
CGGCCGGACCCCCGCCTCTCGGCCCCCTGGCTCCGCTGGCCCTGGAGGGCGGGGCTGGTG
AGGAGGCGAGAATGTGGACGTTCGTCACCCAGCTCCTCGTCACCCTGGTGCTGCTGGGCT
TCTTCCTGGTCAGCTGCCAGAACGTGATGCACATTGTCCGGGGCTCTCTGTGCTTCGTGC
TGAAGCACATCCACCAGGAGCTGGACAAGGAGCTGGGGGAGAACGAGGGCCTGAGCGACG
ACGAGGAGGCCATCTCCACCAGGGTGGTGCGGCGCCGGGTCCTTCGGAAGGGGAATGAGT
TTCTTCAGAATATTCCAGGGGAGCAGGTGTCAGAGGAGCATTACACGGATGAGCAGGGCA
ATGTCGTCACCAGGAAGGTCATCCGCAAAGTTGTTCGCCAGATAGACCCGTCCGGAGCCG
ATGACACCCAGGAGCACGAGGAGGTGGAGCTGAGAGGGAACAGCCTTCACCCAGACCTGA
TAGAGGGCAGGAAGGGGGCACAGATAGTGAAGCGGGCCAGCCTCAAAAGGGGGAAGCAGT
GATCTCAAGCCCCTCCCTGTCGAATGGCCTCTCTGGAGGATCACACGTCGACACCCAACC
CTTGAACTCCACACACTCTGCCACGCACCCAGGAGGAGAGCTGGCCCGGAGGCCCCGGAA
GCAGCACACACGTCCCCCCGGAGGCTGACGGCATGACCTCTGTAAGGGACTTCCTTTAGT
CACCTACTCGCATGAAGGACTGACTGTAGACGCATGACCTGCAGTCCTCAATCCTGCCTC
TAGGACTGTGGAGCTCTGTTGGGAATCAGGACAGGATGAAGCCGCCCGAGCAGAGAGAGA
GAGAGAGGGACGCGAGGGCGCAGGAGAGCGCTGAGCGCAACAGCAAACAAGGGCTCTTTT
GTGGCTGGGATGAGATATTTTTTTAAATCATTTCAATTTCGACGTGTTACAGGGTACTTT
TTTTTCAACCTCATCTGTAGGAAATCCATGTGAGCTTCCTGGAAAGGAAAAACAAAAAAA
AAACAAACAAAAAAAAGAACAAGAACCAATTCAGCCCCTTAATCCCTTGTCCTCGTCTGC
CAGCCTTCCCCACCCGTACGCCCCACCCACCATTTATGACCGTCCCTTCCGATCCCCAGT
GGACTGAACCTTCCAGGACGCTCTACATGGCATCAGGACACACACACACGCGCACAGGCA
CATACACCCTCTCCCCTCTACTTAGTATACACACACAGATTTTACTGTGACGTCTGAAGC
TGTGTAGACTCTCCTGTGGATAAACTGGAATTTTTTTTATGTTGTCTCTCTCTCTCTCCG
CCAGTTTCAGTATCAATCATCTTCCAATGGAAAATCATCACCTTTAGAGTGCATTCGGGG
TTCCTTGTGTTAGGGACATAAGAATTGAGGCGAGGACCCCCCCAGGCTTAGCTGTAGGGC
TCCAAGGGAGCCGGCGCCCCCATCTGAAAGGGTCTTGCAGCTGGGGGAGGGCCGGTGGCT
GTCCCAGGATTGCACCAGCATGTTCAATAGAGAAGAGGTTTTCTATATCTTCAAGCACTT
ATATCATAGTCCGTGTTCAAAGTGTAAACTCTGCAGTAATCAGCCTTGTGTATATGACAA
ACAATAAATACTATGCAAACCAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               P70440_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               P70440_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1386-1538, - strand, RNAz p=0.827774

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1386-1538, - strand, RNAz p=0.827774

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-247, gnl|bosTau2|chr27 (22049052-22049287)
               

               
               1-247, gnl|Hg17|chr8 (41641868-41641583)
               

               
               1-247, gnl|Mm7|chr8 (21924420-21924709)
               


               
               637-1709, gnl|bosTau2|chr27 (22058888-22059984)
               

               
               637-1709, gnl|Hg17|chr8 (41632431-41631370)
               

               
               637-1709, gnl|Mm7|chr8 (21933596-21934604)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-247, gnl|bosTau2|chr27 (22049052-22049287)
               

               
               1-247, gnl|Hg17|chr8 (41641868-41641583)
               

               
               1-247, gnl|Mm7|chr8 (21924420-21924709)
               


               
               637-1709, gnl|bosTau2|chr27 (22058888-22059984)
               

               
               637-1709, gnl|Hg17|chr8 (41632431-41631370)
               

               
               637-1709, gnl|Mm7|chr8 (21933596-21934604)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               che (6.8157)
               

               
               ldo (2.71607)
               

               
               sme (2.13806)
               

               
               hlv (1.81033)
               

               
               hea (1.63599)
               

               
               ste (1.6225)
               

               
               ssp (1.21968)
               

               
               tbr (0.925069)
               

               
               mas (0.630915)
               

               
               nep (0.36785)
               

               
               vin (0.332557)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               cst (0.140036)
               

               
               nca (0.136874)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (6.8157)
               

               
               ldo (2.71607)
               

               
               sme (2.13806)
               

               
               hlv (1.81033)
               

               
               hea (1.63599)
               

               
               ste (1.6225)
               

               
               ssp (1.21968)
               

               
               tbr (0.925069)
               

               
               mas (0.630915)
               

               
               nep (0.36785)
               

               
               vin (0.332557)
               

               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               cst (0.140036)
               

               
               nca (0.136874)

	1-247, gnl\|bosTau2\|chr27 (22049052-22049287)
	1-247, gnl\|Hg17\|chr8 (41641868-41641583)
	1-247, gnl\|Mm7\|chr8 (21924420-21924709)

	637-1709, gnl\|bosTau2\|chr27 (22058888-22059984)
	637-1709, gnl\|Hg17\|chr8 (41632431-41631370)
	637-1709, gnl\|Mm7\|chr8 (21933596-21934604)

	che (6.8157)
	ldo (2.71607)
	sme (2.13806)
	hlv (1.81033)
	hea (1.63599)
	ste (1.6225)
	ssp (1.21968)
	tbr (0.925069)
	mas (0.630915)
	nep (0.36785)
	vin (0.332557)
	ese (0.253004)
	nms (0.213858)
	eye (0.170503)
	bfe (0.149858)
	cst (0.140036)
	nca (0.136874)