Non-Coding RNA Search

Ss1.1-Mixg-0003a01.3.5

Sequence:


               
               TTGGGGGGTGGGGAGGGGATCTATCCTGGATTGGGCCAGCCTAAATAATACTGGCAACCA
AGATTCTGTTAGGATTTCTGTGCATATAGTGTAGTAAAGAAGTATCATTCAAGGGTGAAA
ACAGAGCCGTTTTAACAATGTTGAGTACATTTGGCTGTTCTACAGCTTTTTCCTTCCTTC
CCCAAAGAAGTCGTTTGCCTAACTCTCAAACTGTTGGGGTGGTACATTCCTTTAGGACCA
ATTAAAACATAACTTTTGGGTCAGTAATATATTTGGCTGACTCTGATGCAGTATTCTCTT
AGGTCATTATATTCTCTCATGTACAGTTACAGGAAATTAAAATGTTAAAGTAACCTAAAA
TGAATTCAGACCAGTAAAATCAAGGGAAATAAAGTTGAATTCCATTACTTCTGTAAGTTG
CTTGCTATTAAAAAAAAGTAAAGAGGCCAGGTTGCCCACCGTTTTGTGCACTGTTGTGAC
ACTTTCCCCAGGAAGAAAACCATGTACAAAGGTCGAGGTGGAGGCATGACGAAGAGGAAG
TTGTTAAGGATGGTATTCATGTGTCTCTGTGCTCTCTTGCCTTATGCCTCAGTACGGTTG
AAAAACTTGTGTACTGGCCAATGGTGGTATACAGTATGGGATAGTGTCATAACCAATTTG
ACAATTTATTAATCACAAAATAACAATAAATCTCTAGCTTTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGGGGGTGGGGAGGGGATCTATCCTGGATTGGGCCAGCCTAAATAATACTGGCAACCA
AGATTCTGTTAGGATTTCTGTGCATATAGTGTAGTAAAGAAGTATCATTCAAGGGTGAAA
ACAGAGCCGTTTTAACAATGTTGAGTACATTTGGCTGTTCTACAGCTTTTTCCTTCCTTC
CCCAAAGAAGTCGTTTGCCTAACTCTCAAACTGTTGGGGTGGTACATTCCTTTAGGACCA
ATTAAAACATAACTTTTGGGTCAGTAATATATTTGGCTGACTCTGATGCAGTATTCTCTT
AGGTCATTATATTCTCTCATGTACAGTTACAGGAAATTAAAATGTTAAAGTAACCTAAAA
TGAATTCAGACCAGTAAAATCAAGGGAAATAAAGTTGAATTCCATTACTTCTGTAAGTTG
CTTGCTATTAAAAAAAAGTAAAGAGGCCAGGTTGCCCACCGTTTTGTGCACTGTTGTGAC
ACTTTCCCCAGGAAGAAAACCATGTACAAAGGTCGAGGTGGAGGCATGACGAAGAGGAAG
TTGTTAAGGATGGTATTCATGTGTCTCTGTGCTCTCTTGCCTTATGCCTCAGTACGGTTG
AAAAACTTGTGTACTGGCCAATGGTGGTATACAGTATGGGATAGTGTCATAACCAATTTG
ACAATTTATTAATCACAAAATAACAATAAATCTCTAGCTTTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               497-615, + strand, RNAz p=0.889757

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               497-615, + strand, RNAz p=0.889757

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_013438, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_013438, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               224-712, gnl|bosTau2|chr18 (27193347-27193829)
               

               
               224-712, gnl|Hg17|chr9 (83504912-83504442)
               

               
               224-712, gnl|Mm7|chr13 (57271103-57270640)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               224-712, gnl|bosTau2|chr18 (27193347-27193829)
               

               
               224-712, gnl|Hg17|chr9 (83504912-83504442)
               

               
               224-712, gnl|Mm7|chr13 (57271103-57270640)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               fco (0.78604)
               

               
               sug (0.763747)
               

               
               cbe (0.717703)
               

               
               cte (0.58548)
               

               
               gul (0.532765)
               

               
               thg (0.507164)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               sug (0.763747)
               

               
               cbe (0.717703)
               

               
               cte (0.58548)
               

               
               gul (0.532765)
               

               
               thg (0.507164)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               ski (0.29347)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	224-712, gnl\|bosTau2\|chr18 (27193347-27193829)
	224-712, gnl\|Hg17\|chr9 (83504912-83504442)
	224-712, gnl\|Mm7\|chr13 (57271103-57270640)

	fco (0.78604)
	sug (0.763747)
	cbe (0.717703)
	cte (0.58548)
	gul (0.532765)
	thg (0.507164)
	sin (0.349895)
	rec (0.346141)
	fhi (0.339155)
	vin (0.332557)
	lun (0.300978)
	bfe (0.299715)
	ski (0.29347)
	lyg (0.266205)
	ova (0.258264)
	pgl (0.236967)
	spc (0.226732)
	fcc (0.197785)
	cmu (0.186393)
	sto (0.179824)
	fbs (0.175346)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)
	kid (0.129735)
	bla (0.124347)
	eru (0.120048)
	clu (0.119646)
	ebs (0.118301)
	cty (0.10408)
	ldo (0.0970026)