Non-Coding RNA Search

Ss1.1-Mixg-0003f06.5

Sequence:


               
               AACAGCTTTGATATTGATGTGTTTGCTTTGTTTTCTCCCCTGTCCCAGACTCCCAACCCC
CAATTTTCTAGTTAACTTTTTTCCACATCCCTCTTGATATTCAATACAATTCAATTACTT
AAGATTCAGTTTTCCCCATTTTTTGTAATATATATATTTTTGTGAATTATACCTGGTTGC
TTTAAAAAAAAATCAGTTAAGTTAATAAGTTGATGTTTTGTAAAACCCTTTTTCCTAGTG
GTGTCATTTTTGAATGCTTCATAAATTAATTATTCTGGAGCTTATGTTTCTTCTCTGTTT
GCTTTTGAACGTATGTGCTCTTATAAAGTGGACTTCTGAAAAATGAATGTAAAAGACACT
GGTGTGTACCTCAGAAGGGGATGGTGTTGTCACAAACTGTGGTTAATCCAATCAATTTAA
ATGTTTACTGTAGACCAAAAGGAGAGATTATTAAATGTCTAATGTTTATACAGAGTAATT
ATAGGAAGTTCTTTTTGTACAGTATTTTTCAGATATAAATACTGACAATGTATTTTGGAA
GACATATATTATATATAGCAAAGAGAAAAGGAAAACTATTCCATGTTTTAAAATTATATA
GCAAAGATATATATTCATCAACGTTGTACAGAGAAGAAGTGCTTGGGGGTTTTTGAAGTC
TTTAATATTTTAAGCCTATCACCAACACATCAGCATGTTTTCCGCTTTCAATTAAATTTT
TATGACAGTATCGAAGCTTGCTGTGACGAATTCTGCTCTAAAATATATAAGGGGCTTTCT
TATTTCTTATTAGGTCTCAGAAAGAAGTCAGTTAACGTAACCCAAAAGCACAAAATGGAT
GTTAGTCAAATATTTATTGGATGATGCAGTGTTTTTTAGGAAAAGCATCTGCCACAAAAA
TGTTCACTTCAAAATTGTGAGTTCCTGGAATGGAATATCACTGTAAGCATCCCAAACAAT
TCTGTTCTCCTCTGTGGGCACGTGCATCTTACACAGCATAAGGTTAATATCGGTGCTATG
TGTATGGTTTGTAATTTAATAGATGTTTTGACCTTAAAGACGACTGTTCTTTCATTTCTC
TAACTTGTGTCAAGAGATTCTGCTGTTGTTGCAAAAAAACATTTTCTGCTAGATTAAAAT
ACCCTTTCATCCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGCTTTGATATTGATGTGTTTGCTTTGTTTTCTCCCCTGTCCCAGACTCCCAACCCC
CAATTTTCTAGTTAACTTTTTTCCACATCCCTCTTGATATTCAATACAATTCAATTACTT
AAGATTCAGTTTTCCCCATTTTTTGTAATATATATATTTTTGTGAATTATACCTGGTTGC
TTTAAAAAAAAATCAGTTAAGTTAATAAGTTGATGTTTTGTAAAACCCTTTTTCCTAGTG
GTGTCATTTTTGAATGCTTCATAAATTAATTATTCTGGAGCTTATGTTTCTTCTCTGTTT
GCTTTTGAACGTATGTGCTCTTATAAAGTGGACTTCTGAAAAATGAATGTAAAAGACACT
GGTGTGTACCTCAGAAGGGGATGGTGTTGTCACAAACTGTGGTTAATCCAATCAATTTAA
ATGTTTACTGTAGACCAAAAGGAGAGATTATTAAATGTCTAATGTTTATACAGAGTAATT
ATAGGAAGTTCTTTTTGTACAGTATTTTTCAGATATAAATACTGACAATGTATTTTGGAA
GACATATATTATATATAGCAAAGAGAAAAGGAAAACTATTCCATGTTTTAAAATTATATA
GCAAAGATATATATTCATCAACGTTGTACAGAGAAGAAGTGCTTGGGGGTTTTTGAAGTC
TTTAATATTTTAAGCCTATCACCAACACATCAGCATGTTTTCCGCTTTCAATTAAATTTT
TATGACAGTATCGAAGCTTGCTGTGACGAATTCTGCTCTAAAATATATAAGGGGCTTTCT
TATTTCTTATTAGGTCTCAGAAAGAAGTCAGTTAACGTAACCCAAAAGCACAAAATGGAT
GTTAGTCAAATATTTATTGGATGATGCAGTGTTTTTTAGGAAAAGCATCTGCCACAAAAA
TGTTCACTTCAAAATTGTGAGTTCCTGGAATGGAATATCACTGTAAGCATCCCAAACAAT
TCTGTTCTCCTCTGTGGGCACGTGCATCTTACACAGCATAAGGTTAATATCGGTGCTATG
TGTATGGTTTGTAATTTAATAGATGTTTTGACCTTAAAGACGACTGTTCTTTCATTTCTC
TAACTTGTGTCAAGAGATTCTGCTGTTGTTGCAAAAAAACATTTTCTGCTAGATTAAAAT
ACCCTTTCATCCAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1151, gnl|bosTau2|chr19 (1078555-1077419)
               

               
               1-1151, gnl|Hg17|chr17 (50754186-50755342)
               

               
               1-1151, gnl|Mm7|chr11 (90448783-90447606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1151, gnl|bosTau2|chr19 (1078555-1077419)
               

               
               1-1151, gnl|Hg17|chr17 (50754186-50755342)
               

               
               1-1151, gnl|Mm7|chr11 (90448783-90447606)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)

	1-1151, gnl\|bosTau2\|chr19 (1078555-1077419)
	1-1151, gnl\|Hg17\|chr17 (50754186-50755342)
	1-1151, gnl\|Mm7\|chr11 (90448783-90447606)

	ret (0.257467)
	cbe (0.239234)
	mgp (0.230681)
	sag (0.182715)
	cki (0.165235)
	mga (0.160205)
	fco (0.157208)
	bfe (0.149858)
	liv (0.146284)
	hyp (0.142837)
	kid (0.129735)