Non-Coding RNA Search

Ss1.1-Mixg-0003g05.3

Sequence:


               
               AACATCGTCCTGGACCTTCCTTCCGCCCGGCTGGGCCCCCAGAGGGGTGCACAGAGGATG
GCGGTCAACCCAGAGCAGCTTATTTGAAGTCCTGCCTCCTCCTCCTTGAAGCTTCAATGT
CTCCCGCTTGGTGTTGGCCTTAAACTGGGGCAAATGAGGCTGCCGTTTCCAAGGCTCCCC
ATCTCCAGAGGAGGCTCCGGGGCTGGGGGGCCCGGGATTCCTCACTACATCCTGGACTCT
GTCCATCCTGCAACTCAGAGCCCTTTGCACCAGCGAAGGAAGGACTGCCTCTGGCTCCTG
TGCCAGCCCCTCAGACTCTCTGGGGGGTGGGGGGTGACTTTAGGGAGGGCTCTGGAAGCT
TCTGGAAGTATGCTGGTCTCCCAGGTGAGGTCTGTGGGAGGAGAGCCTCTGGCTGGCTCA
CCCCGCACCTCTGCAGCAGGAAGCCTATGGACTGGAATTGGTGTGATGATGGTTTGGGGC
CAGGAGGGAAGGCTGGCTTGGCTCGGCGGGACCTGATGTGGGGGGTGGGGTGGGGTGGGG
AACGGTGTGGGAGGGATGTTGGGGTCTCTAGTGCCTTCGCTGTGACAGGGCCTGTGAAGT
GTTTGCTTCCAATGTGCTTTGGCTTCTCCCCGTTGGGCTCGACCCTTCTCAAGCTGGGTC
TTTTGTCTTTTGATTTTAGTCTCCAAAATAGATGCTCATCTTTGGCTCCGGAGGGAGCCG
AAGCAAGGGGAGTATCGCCCCTCTCAAGGGTCCACCTCCTGTGCAGAGGTTAAAAGGGTC
AGAGGGGGGCGATGCTGCCCACATGCTTGATTCCCACTCTGCCCCACTGCTAGGGAGGGC
TGTGGAATAAATTATTTTTGTTAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACATCGTCCTGGACCTTCCTTCCGCCCGGCTGGGCCCCCAGAGGGGTGCACAGAGGATG
GCGGTCAACCCAGAGCAGCTTATTTGAAGTCCTGCCTCCTCCTCCTTGAAGCTTCAATGT
CTCCCGCTTGGTGTTGGCCTTAAACTGGGGCAAATGAGGCTGCCGTTTCCAAGGCTCCCC
ATCTCCAGAGGAGGCTCCGGGGCTGGGGGGCCCGGGATTCCTCACTACATCCTGGACTCT
GTCCATCCTGCAACTCAGAGCCCTTTGCACCAGCGAAGGAAGGACTGCCTCTGGCTCCTG
TGCCAGCCCCTCAGACTCTCTGGGGGGTGGGGGGTGACTTTAGGGAGGGCTCTGGAAGCT
TCTGGAAGTATGCTGGTCTCCCAGGTGAGGTCTGTGGGAGGAGAGCCTCTGGCTGGCTCA
CCCCGCACCTCTGCAGCAGGAAGCCTATGGACTGGAATTGGTGTGATGATGGTTTGGGGC
CAGGAGGGAAGGCTGGCTTGGCTCGGCGGGACCTGATGTGGGGGGTGGGGTGGGGTGGGG
AACGGTGTGGGAGGGATGTTGGGGTCTCTAGTGCCTTCGCTGTGACAGGGCCTGTGAAGT
GTTTGCTTCCAATGTGCTTTGGCTTCTCCCCGTTGGGCTCGACCCTTCTCAAGCTGGGTC
TTTTGTCTTTTGATTTTAGTCTCCAAAATAGATGCTCATCTTTGGCTCCGGAGGGAGCCG
AAGCAAGGGGAGTATCGCCCCTCTCAAGGGTCCACCTCCTGTGCAGAGGTTAAAAGGGTC
AGAGGGGGGCGATGCTGCCCACATGCTTGATTCCCACTCTGCCCCACTGCTAGGGAGGGC
TGTGGAATAAATTATTTTTGTTAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               191-282, + strand, RNAz p=0.572061

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-282, + strand, RNAz p=0.572061

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002826, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002826, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               76-480, gnl|bosTau2|chr16 (41955896-41956323)
               

               
               76-480, gnl|canFam2|chr7 (16713814-16714328)
               

               
               76-480, gnl|dasNov1|scaffold_41711 (1180-1672)
               

               
               76-480, gnl|echTel1|scaffold_297715 (7750-7300)
               

               
               76-480, gnl|hg17|chr1 (176897872-176898380)
               

               
               76-480, gnl|Hg17|chr1 (176898122-176898494)
               

               
               76-480, gnl|loxAfr1|scaffold_26824 (4910-4431)
               

               
               76-480, gnl|mm7|chr1 (155741011-155740492)
               

               
               76-480, gnl|Mm7|chr1 (155740745-155740336)
               

               
               76-480, gnl|oryCun1|scaffold_205590 (59089-58700)
               

               
               76-480, gnl|panTro1|chr1 (159266116-159266624)
               

               
               76-480, gnl|rheMac2|chr1 (190533210-190532702)
               

               
               76-480, gnl|rn3|chr13 (70754826-70754312)
               


               
               527-869, gnl|bosTau2|chr16 (41956320-41956665)
               

               
               527-869, gnl|Hg17|chr1 (176898491-176898826)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-480, gnl|bosTau2|chr16 (41955896-41956323)
               

               
               76-480, gnl|canFam2|chr7 (16713814-16714328)
               

               
               76-480, gnl|dasNov1|scaffold_41711 (1180-1672)
               

               
               76-480, gnl|echTel1|scaffold_297715 (7750-7300)
               

               
               76-480, gnl|hg17|chr1 (176897872-176898380)
               

               
               76-480, gnl|Hg17|chr1 (176898122-176898494)
               

               
               76-480, gnl|loxAfr1|scaffold_26824 (4910-4431)
               

               
               76-480, gnl|mm7|chr1 (155741011-155740492)
               

               
               76-480, gnl|Mm7|chr1 (155740745-155740336)
               

               
               76-480, gnl|oryCun1|scaffold_205590 (59089-58700)
               

               
               76-480, gnl|panTro1|chr1 (159266116-159266624)
               

               
               76-480, gnl|rheMac2|chr1 (190533210-190532702)
               

               
               76-480, gnl|rn3|chr13 (70754826-70754312)
               


               
               527-869, gnl|bosTau2|chr16 (41956320-41956665)
               

               
               527-869, gnl|Hg17|chr1 (176898491-176898826)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               amn (1.67084)
               

               
               cli (0.764059)
               

               
               mas (0.42061)
               

               
               mcp (0.341297)
               

               
               eep (0.245128)
               

               
               fli (0.202881)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (1.67084)
               

               
               cli (0.764059)
               

               
               mas (0.42061)
               

               
               mcp (0.341297)
               

               
               eep (0.245128)
               

               
               fli (0.202881)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	76-480, gnl\|bosTau2\|chr16 (41955896-41956323)
	76-480, gnl\|canFam2\|chr7 (16713814-16714328)
	76-480, gnl\|dasNov1\|scaffold_41711 (1180-1672)
	76-480, gnl\|echTel1\|scaffold_297715 (7750-7300)
	76-480, gnl\|hg17\|chr1 (176897872-176898380)
	76-480, gnl\|Hg17\|chr1 (176898122-176898494)
	76-480, gnl\|loxAfr1\|scaffold_26824 (4910-4431)
	76-480, gnl\|mm7\|chr1 (155741011-155740492)
	76-480, gnl\|Mm7\|chr1 (155740745-155740336)
	76-480, gnl\|oryCun1\|scaffold_205590 (59089-58700)
	76-480, gnl\|panTro1\|chr1 (159266116-159266624)
	76-480, gnl\|rheMac2\|chr1 (190533210-190532702)
	76-480, gnl\|rn3\|chr13 (70754826-70754312)

	527-869, gnl\|bosTau2\|chr16 (41956320-41956665)
	527-869, gnl\|Hg17\|chr1 (176898491-176898826)

	amn (1.67084)
	cli (0.764059)
	mas (0.42061)
	mcp (0.341297)
	eep (0.245128)
	fli (0.202881)
	ton (0.1755)
	nje (0.16592)
	pty (0.142714)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	med (0.116252)
	jca (0.11396)
	eje (0.0988338)