Ss1.1-Mixg-0003g09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGATGCTGTCCTTGCCTTGCGGCTGGCTTTGCACGACCATAGGCTTGCCGACCATGTTT GGGTACATTATCTGCGGCGTCCTTCTGGGGCCCTCGGGACTCAACAGTATTAAGTCGACT GTGCAGGTGGAGACGTTAGGAGAATTCGGTGTGTTCTTTACGCTCTTCCTCGTCGGCTTA GAATTCTCCCCAGAGAAGCTGAGAAAGGTGTGGAGGATCTCGCTGCAGGGGCCCTGCTAC ATGACCCTCCTCATGGTGGCCTTCGGCTTGTTCTGGGGACACTTTCTGCAGATCAGACCC ACTCAGAGCGTCTTTATCTCCACCTGCTTGTCCCTGTCCAGCACACCCCTGGTGTCCAAG TTCCTTGTGGGCGGCACCCGCAGCGACAAGGAGGGTGACGTGGACTACAGCGCGGTGCTG CTGGGAGTGCTGGTGATGCAGGACGTGCAGCTGGGGCTGTTCATCGCCGTCCTGCCCACC TTCATCCAGGCAGGGGCCGGCGCGCACTCCAGCGTCGCCGTGGAGCTCCTGCGGATCCTG GCGCTGGTCGGGCAGGTCCTGCTCTCCCTCGCGGCTGTTCTCCTCTTCTGCCTCGTGCTG AAGGCTTGCCTGGTGGGCCCGTGTTTCCGGAAGCTGCACGCGGAGGGCAAGGGGAACAAG GAGCTCCTCACCCTGGGAACCTCCGCCTTCATCTTCCTCATGCTGACGGTCACGGAGCTG CTGGATGTGTCCATGGAGCTGGGCTGCTTCCTGGCTGGAGCCCTCATCTCCTCCCAGGGC CACATGGTCGCCGATGAGGTCCTGTCCTACGTGGAGCCCGTCCGGGATTTCCTGGCCATC ATCTTCTTCGCGTCTATAGGCCTCCACGTCTTCCCCACCTTCGTGCTGTACGAGCTCAGC GTCCTGCTGGTCCTCACGCTGTCGGTGGTGGTCATGAAGTTTGTCCTGGCAGCCCTGGTC CTGTCTCTCCTCCTGCCCAAGACCAGCCAGTATATCAAGTGGATCGTGGCCGCAGGGCTG GCCCAAGTCAGCGAGTTCTCTCTGGTCCTTGGGAGCAGAGCACGCAGAGCCCGTGTCATT TCTCGGGAGGTGTACCTTCTCATCCTGGGTGTGACCACACTCAGCCTCTTGCTGGCCCCG GTGCTGTGGCGGGTGGCAATTGCCAGGTGTGTGCCGAGGCCTGAGAGGCGGTCCAGTCTC TGAGGACTGCTGCTGTCGTCACCATCTTGGGACCTTCTGCACTGGGAACAGAGCACTCTG CCCGAGGGCGTCTTCACATCTGCCGCTTCTCAGACTTGCTGTGCTTCAGTCTCCCAGAGT CAGTTACTGCGTTCAGCCAATTCCACGCGGTGTAAGTGTAACACTGCATTTTACGGGCCG TCTTGACTGTTGGGCCTGGATGTGCCTTTTCTCTGAAATGAGTGTTAACTCTCTATTGTT GTTTCATCAGTTCATGTTTTTTTTGGTAAAGAAAGTTAGGAAGCTTCATTATTTATTGTA CAACTTTACTGTTGTAATCTGTTGGTCAATATTCGTTATTAAACGTTTCTGTGGTGTGAA ATTTTAATTCCGACAAGGAGTCTGGAAAGTTACTCTTAGTCCTTAAAGTCTGTTTTTTAA AATGAAACAAATATCTACTAAAAGTTACTCAGATTTGAAGAAGAAATAAGGGTTTACAGA CAAGCAAGATACTCTTCAGGGTAGATCACATGCTAGGGCACAAAACAAGTCTCAATAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGATGCTGTCCTTGCCTTGCGGCTGGCTTTGCACGACCATAGGCTTGCCGACCATGTTT GGGTACATTATCTGCGGCGTCCTTCTGGGGCCCTCGGGACTCAACAGTATTAAGTCGACT GTGCAGGTGGAGACGTTAGGAGAATTCGGTGTGTTCTTTACGCTCTTCCTCGTCGGCTTA GAATTCTCCCCAGAGAAGCTGAGAAAGGTGTGGAGGATCTCGCTGCAGGGGCCCTGCTAC ATGACCCTCCTCATGGTGGCCTTCGGCTTGTTCTGGGGACACTTTCTGCAGATCAGACCC ACTCAGAGCGTCTTTATCTCCACCTGCTTGTCCCTGTCCAGCACACCCCTGGTGTCCAAG TTCCTTGTGGGCGGCACCCGCAGCGACAAGGAGGGTGACGTGGACTACAGCGCGGTGCTG CTGGGAGTGCTGGTGATGCAGGACGTGCAGCTGGGGCTGTTCATCGCCGTCCTGCCCACC TTCATCCAGGCAGGGGCCGGCGCGCACTCCAGCGTCGCCGTGGAGCTCCTGCGGATCCTG GCGCTGGTCGGGCAGGTCCTGCTCTCCCTCGCGGCTGTTCTCCTCTTCTGCCTCGTGCTG AAGGCTTGCCTGGTGGGCCCGTGTTTCCGGAAGCTGCACGCGGAGGGCAAGGGGAACAAG GAGCTCCTCACCCTGGGAACCTCCGCCTTCATCTTCCTCATGCTGACGGTCACGGAGCTG CTGGATGTGTCCATGGAGCTGGGCTGCTTCCTGGCTGGAGCCCTCATCTCCTCCCAGGGC CACATGGTCGCCGATGAGGTCCTGTCCTACGTGGAGCCCGTCCGGGATTTCCTGGCCATC ATCTTCTTCGCGTCTATAGGCCTCCACGTCTTCCCCACCTTCGTGCTGTACGAGCTCAGC GTCCTGCTGGTCCTCACGCTGTCGGTGGTGGTCATGAAGTTTGTCCTGGCAGCCCTGGTC CTGTCTCTCCTCCTGCCCAAGACCAGCCAGTATATCAAGTGGATCGTGGCCGCAGGGCTG GCCCAAGTCAGCGAGTTCTCTCTGGTCCTTGGGAGCAGAGCACGCAGAGCCCGTGTCATT TCTCGGGAGGTGTACCTTCTCATCCTGGGTGTGACCACACTCAGCCTCTTGCTGGCCCCG GTGCTGTGGCGGGTGGCAATTGCCAGGTGTGTGCCGAGGCCTGAGAGGCGGTCCAGTCTC TGAGGACTGCTGCTGTCGTCACCATCTTGGGACCTTCTGCACTGGGAACAGAGCACTCTG CCCGAGGGCGTCTTCACATCTGCCGCTTCTCAGACTTGCTGTGCTTCAGTCTCCCAGAGT CAGTTACTGCGTTCAGCCAATTCCACGCGGTGTAAGTGTAACACTGCATTTTACGGGCCG TCTTGACTGTTGGGCCTGGATGTGCCTTTTCTCTGAAATGAGTGTTAACTCTCTATTGTT GTTTCATCAGTTCATGTTTTTTTTGGTAAAGAAAGTTAGGAAGCTTCATTATTTATTGTA CAACTTTACTGTTGTAATCTGTTGGTCAATATTCGTTATTAAACGTTTCTGTGGTGTGAA ATTTTAATTCCGACAAGGAGTCTGGAAAGTTACTCTTAGTCCTTAAAGTCTGTTTTTTAA AATGAAACAAATATCTACTAAAAGTTACTCAGATTTGAAGAAGAAATAAGGGTTTACAGA CAAGCAAGATACTCTTCAGGGTAGATCACATGCTAGGGCACAAAACAAGTCTCAATAAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 3-114, gnl|bosTau2|chr12 (48228569-48228458) | |
| 3-114, gnl|canFam2|chr22 (63756958-63757123) | |
| 3-114, gnl|danRer3|chrUn (104879402-104879264) | |
| 3-114, gnl|dasNov1|scaffold_39866 (4257-4393) | |
| 3-114, gnl|fr1|chrUn (163001128-163000973) | |
| 3-114, gnl|galGal2|chr1 (130379874-130379710) | |
| 3-114, gnl|hg17|chr13 (113204041-113204204) | |
| 3-114, gnl|Hg17|chr13 (113204085-113204196) | |
| 3-114, gnl|loxAfr1|scaffold_12824 (53757-53590) | |
| 3-114, gnl|mm7|chr8 (13270170-13270336) | |
| 3-114, gnl|Mm7|chr8 (13270217-13270328) | |
| 3-114, gnl|monDom2|scaffold_11 (31776186-31776023) | |
| 3-114, gnl|panTro1|chr14 (96826916-96827079) | |
| 3-114, gnl|rn3|chr16 (81102570-81102405) | |
| 3-114, gnl|tetNig1|chr5 (8278127-8277990) | |
| 3-114, gnl|xenTro1|scaffold_1119 (55643-55793) | |
| 206-403, gnl|bosTau2|chr12 (48224273-48224077) | |
| 206-403, gnl|canFam2|chr22 (63760975-63761187) | |
| 206-403, gnl|dasNov1|scaffold_39866 (4468-4656) | |
| 206-403, gnl|echTel1|scaffold_220634 (1753-1965) | |
| 206-403, gnl|fr1|chrUn (163000751-163000540) | |
| 206-403, gnl|galGal2|chr1 (130377791-130377584) | |
| 206-403, gnl|hg17|chr13 (113212539-113212751) | |
| 206-403, gnl|Hg17|chr13 (113212552-113212748) | |
| 206-403, gnl|loxAfr1|scaffold_12824 (40655-40443) | |
| 206-403, gnl|mm7|chr8 (13277933-13278145) | |
| 206-403, gnl|Mm7|chr8 (13277946-13278142) | |
| 206-403, gnl|monDom2|scaffold_11 (31765571-31765359) | |
| 206-403, gnl|oryCun1|scaffold_199283 (39541-39753) | |
| 206-403, gnl|panTro1|chr14 (96836086-96836298) | |
| 206-403, gnl|rn3|chr16 (81090504-81090293) | |
| 206-403, gnl|tetNig1|chr5 (8277770-8277559) | |
| 206-403, gnl|xenTro1|scaffold_1119 (57819-58033) | |
| 509-714, gnl|bosTau2|chr12 (48216640-48216435) | |
| 509-714, gnl|Hg17|chr13 (113236357-113236562) | |
| 509-714, gnl|Mm7|chr8 (13284361-13284566) | |
| 938-1092, gnl|bosTau2|chr12 (48213860-48213706) | |
| 938-1092, gnl|canFam2|chr22 (63788709-63788875) | |
| 938-1092, gnl|danRer3|chrUn (104877023-104876861) | |
| 938-1092, gnl|dasNov1|scaffold_86009 (559-392) | |
| 938-1092, gnl|echTel1|scaffold_219509 (3738-3905) | |
| 938-1092, gnl|fr1|chrUn (162999535-162999364) | |
| 938-1092, gnl|galGal2|chr1 (130361273-130361103) | |
| 938-1092, gnl|hg17|chr13 (113250607-113250785) | |
| 938-1092, gnl|Hg17|chr13 (113250617-113250771) | |
| 938-1092, gnl|loxAfr1|scaffold_12824 (5639-5462) | |
| 938-1092, gnl|mm7|chr8 (13293971-13294149) | |
| 938-1092, gnl|Mm7|chr8 (13293981-13294135) | |
| 938-1092, gnl|monDom2|scaffold_11 (31743664-31743496) | |
| 938-1092, gnl|oryCun1|scaffold_60632 (1340-1162) | |
| 938-1092, gnl|panTro1|chr14_random (3043785-3043963) | |
| 938-1092, gnl|rn3|chr16 (81074780-81074602) | |
| 938-1092, gnl|tetNig1|chr5 (8276633-8276470) | |
| 938-1092, gnl|xenTro1|scaffold_1119 (64328-64500) | |
| 1377-1645, gnl|bosTau2|chr12 (48213291-48213028) | |
| 1377-1645, gnl|canFam2|chr22 (63791357-63791687) | |
| 1377-1645, gnl|echTel1|scaffold_110234 (330-4) | |
| 1377-1645, gnl|galGal2|chr1 (130359127-130358741) | |
| 1377-1645, gnl|hg17|chr13 (113252082-113252425) | |
| 1377-1645, gnl|Hg17|chr13 (113252099-113252375) | |
| 1377-1645, gnl|mm7|chr8 (13295318-13295618) | |
| 1377-1645, gnl|Mm7|chr8 (13295322-13295569) | |
| 1377-1645, gnl|monDom2|scaffold_11 (31740204-31739847) | |
| 1377-1645, gnl|rn3|chr16 (81073347-81073049) | |
| 1377-1645, gnl|xenTro1|scaffold_1119 (66018-66344) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-114, gnl|bosTau2|chr12 (48228569-48228458) | |
| 3-114, gnl|canFam2|chr22 (63756958-63757123) | |
| 3-114, gnl|danRer3|chrUn (104879402-104879264) | |
| 3-114, gnl|dasNov1|scaffold_39866 (4257-4393) | |
| 3-114, gnl|fr1|chrUn (163001128-163000973) | |
| 3-114, gnl|galGal2|chr1 (130379874-130379710) | |
| 3-114, gnl|hg17|chr13 (113204041-113204204) | |
| 3-114, gnl|Hg17|chr13 (113204085-113204196) | |
| 3-114, gnl|loxAfr1|scaffold_12824 (53757-53590) | |
| 3-114, gnl|mm7|chr8 (13270170-13270336) | |
| 3-114, gnl|Mm7|chr8 (13270217-13270328) | |
| 3-114, gnl|monDom2|scaffold_11 (31776186-31776023) | |
| 3-114, gnl|panTro1|chr14 (96826916-96827079) | |
| 3-114, gnl|rn3|chr16 (81102570-81102405) | |
| 3-114, gnl|tetNig1|chr5 (8278127-8277990) | |
| 3-114, gnl|xenTro1|scaffold_1119 (55643-55793) | |
| 206-403, gnl|bosTau2|chr12 (48224273-48224077) | |
| 206-403, gnl|canFam2|chr22 (63760975-63761187) | |
| 206-403, gnl|dasNov1|scaffold_39866 (4468-4656) | |
| 206-403, gnl|echTel1|scaffold_220634 (1753-1965) | |
| 206-403, gnl|fr1|chrUn (163000751-163000540) | |
| 206-403, gnl|galGal2|chr1 (130377791-130377584) | |
| 206-403, gnl|hg17|chr13 (113212539-113212751) | |
| 206-403, gnl|Hg17|chr13 (113212552-113212748) | |
| 206-403, gnl|loxAfr1|scaffold_12824 (40655-40443) | |
| 206-403, gnl|mm7|chr8 (13277933-13278145) | |
| 206-403, gnl|Mm7|chr8 (13277946-13278142) | |
| 206-403, gnl|monDom2|scaffold_11 (31765571-31765359) | |
| 206-403, gnl|oryCun1|scaffold_199283 (39541-39753) | |
| 206-403, gnl|panTro1|chr14 (96836086-96836298) | |
| 206-403, gnl|rn3|chr16 (81090504-81090293) | |
| 206-403, gnl|tetNig1|chr5 (8277770-8277559) | |
| 206-403, gnl|xenTro1|scaffold_1119 (57819-58033) | |
| 509-714, gnl|bosTau2|chr12 (48216640-48216435) | |
| 509-714, gnl|Hg17|chr13 (113236357-113236562) | |
| 509-714, gnl|Mm7|chr8 (13284361-13284566) | |
| 938-1092, gnl|bosTau2|chr12 (48213860-48213706) | |
| 938-1092, gnl|canFam2|chr22 (63788709-63788875) | |
| 938-1092, gnl|danRer3|chrUn (104877023-104876861) | |
| 938-1092, gnl|dasNov1|scaffold_86009 (559-392) | |
| 938-1092, gnl|echTel1|scaffold_219509 (3738-3905) | |
| 938-1092, gnl|fr1|chrUn (162999535-162999364) | |
| 938-1092, gnl|galGal2|chr1 (130361273-130361103) | |
| 938-1092, gnl|hg17|chr13 (113250607-113250785) | |
| 938-1092, gnl|Hg17|chr13 (113250617-113250771) | |
| 938-1092, gnl|loxAfr1|scaffold_12824 (5639-5462) | |
| 938-1092, gnl|mm7|chr8 (13293971-13294149) | |
| 938-1092, gnl|Mm7|chr8 (13293981-13294135) | |
| 938-1092, gnl|monDom2|scaffold_11 (31743664-31743496) | |
| 938-1092, gnl|oryCun1|scaffold_60632 (1340-1162) | |
| 938-1092, gnl|panTro1|chr14_random (3043785-3043963) | |
| 938-1092, gnl|rn3|chr16 (81074780-81074602) | |
| 938-1092, gnl|tetNig1|chr5 (8276633-8276470) | |
| 938-1092, gnl|xenTro1|scaffold_1119 (64328-64500) | |
| 1377-1645, gnl|bosTau2|chr12 (48213291-48213028) | |
| 1377-1645, gnl|canFam2|chr22 (63791357-63791687) | |
| 1377-1645, gnl|echTel1|scaffold_110234 (330-4) | |
| 1377-1645, gnl|galGal2|chr1 (130359127-130358741) | |
| 1377-1645, gnl|hg17|chr13 (113252082-113252425) | |
| 1377-1645, gnl|Hg17|chr13 (113252099-113252375) | |
| 1377-1645, gnl|mm7|chr8 (13295318-13295618) | |
| 1377-1645, gnl|Mm7|chr8 (13295322-13295569) | |
| 1377-1645, gnl|monDom2|scaffold_11 (31740204-31739847) | |
| 1377-1645, gnl|rn3|chr16 (81073347-81073049) | |
| 1377-1645, gnl|xenTro1|scaffold_1119 (66018-66344) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| tes (0.415628) | |
| pty (0.285429) | |
| hea (0.204499) | |
| aor (0.195274) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cov (0.132153) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| pty (0.285429) | |
| hea (0.204499) | |
| aor (0.195274) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cov (0.132153) | |
| kid (0.129735) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| eje (0.0988338) |