Non-Coding RNA Search

Ss1.1-Mixg-0004a03.5

Sequence:


               
               GAAGACCCTTCGCACGGTGGAGCCGTCGGACAGCCGGGTGCCCCTGACTGCCGTGGCTGT
CATGCCCGCCCCCTACACCAGCATCACCATGGCCAGCTCTGACTCGACCCTGCGCTTTGT
GGACTGCAGGAAGCCTGGCCTGCAGCATGAGTTCCGCCTGAGCGGCGGGCTGAACCCTGG
TCTGGTTCGCTCCCTGGCTGTCAGCCCCAGCGGCCGGAGTGTCGTGGCCGGCTTCTCCTC
GGGCTTCATGGTGCTCCTGGACACCCGTACAGGCCTGGTTCTGCGGGGCTGGCCTGCCCA
TGAAGGAGACATCCTGCAGATCAAGGCGGTGGAGGGCAGCCTCCTGGTCAGCTCCTCCTC
CGACCATTCCTTGACCGTCTGGAAGGAGCTGGAGCCGAAGCCCACGCATCACTACAAGTC
CGCCTCTGATCCCATCCACACCTTCGACTTGTATGGCAGCGAGGTGGTGACGGGCACCGT
GGCCAACAAGATCGGCGTCTGCTCCTTGCTTGAGCCGCCTTCCCAGGCCACCACCAAGCT
CAGCTCCGAGAACTTCCGCGGCACGCTCACCAGCCTGGCCTTGCTGCCCACCAAACGCCA
CCTCCTGCTGGGCTCAGACAACGGGGTCATCCGCCTCCTGGCGTAGCCAAGGCGGGAGCT
GGCCCGGTGGAGGAGGGCGCACGACCTCGGGGAGTCCATCCCCTCGCCCTTGTCTCCCCA
GCAGCTCCTCCGGGCAAGCCTTAGGCCCACGTGGCCTGCCAGTTAGGGTGGCGTGGGGAG
GTCTGGGCTCCTGAACCCCCAGAGCCACCAAGGCTGCCAGAACGGATCATGCCCCTAGCT
TGGGGCGATGTTGCTCCGGGCCAGCAGGAAGCAGGAGGGAGATCTGGGGGAAAGCATCGC
TGCCCCCACTTCTCCCCAGCTCTGCCCTCATTTTCCATATGGGGACAGGACGCTCCGGGA
AGGGGACAGGAGACCCCCTGCCTGGCCAGTCCCCAGCCACGGTCCCCCCTTGCCGGGCTC
GCTGTGCCCCTATGCCGTGAGGACAGGGAAGCCACCCCAGTCCAGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGACCCTTCGCACGGTGGAGCCGTCGGACAGCCGGGTGCCCCTGACTGCCGTGGCTGT
CATGCCCGCCCCCTACACCAGCATCACCATGGCCAGCTCTGACTCGACCCTGCGCTTTGT
GGACTGCAGGAAGCCTGGCCTGCAGCATGAGTTCCGCCTGAGCGGCGGGCTGAACCCTGG
TCTGGTTCGCTCCCTGGCTGTCAGCCCCAGCGGCCGGAGTGTCGTGGCCGGCTTCTCCTC
GGGCTTCATGGTGCTCCTGGACACCCGTACAGGCCTGGTTCTGCGGGGCTGGCCTGCCCA
TGAAGGAGACATCCTGCAGATCAAGGCGGTGGAGGGCAGCCTCCTGGTCAGCTCCTCCTC
CGACCATTCCTTGACCGTCTGGAAGGAGCTGGAGCCGAAGCCCACGCATCACTACAAGTC
CGCCTCTGATCCCATCCACACCTTCGACTTGTATGGCAGCGAGGTGGTGACGGGCACCGT
GGCCAACAAGATCGGCGTCTGCTCCTTGCTTGAGCCGCCTTCCCAGGCCACCACCAAGCT
CAGCTCCGAGAACTTCCGCGGCACGCTCACCAGCCTGGCCTTGCTGCCCACCAAACGCCA
CCTCCTGCTGGGCTCAGACAACGGGGTCATCCGCCTCCTGGCGTAGCCAAGGCGGGAGCT
GGCCCGGTGGAGGAGGGCGCACGACCTCGGGGAGTCCATCCCCTCGCCCTTGTCTCCCCA
GCAGCTCCTCCGGGCAAGCCTTAGGCCCACGTGGCCTGCCAGTTAGGGTGGCGTGGGGAG
GTCTGGGCTCCTGAACCCCCAGAGCCACCAAGGCTGCCAGAACGGATCATGCCCCTAGCT
TGGGGCGATGTTGCTCCGGGCCAGCAGGAAGCAGGAGGGAGATCTGGGGGAAAGCATCGC
TGCCCCCACTTCTCCCCAGCTCTGCCCTCATTTTCCATATGGGGACAGGACGCTCCGGGA
AGGGGACAGGAGACCCCCTGCCTGGCCAGTCCCCAGCCACGGTCCCCCCTTGCCGGGCTC
GCTGTGCCCCTATGCCGTGAGGACAGGGAAGCCACCCCAGTCCAGGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6P8W0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6P8W0_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               324-442, - strand, RNAz p=0.664114
               

               
               768-882, - strand, RNAz p=0.69491

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               324-442, - strand, RNAz p=0.664114
               

               
               768-882, - strand, RNAz p=0.69491

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-145, gnl|bosTau2|chr19 (17365409-17365553)
               

               
               1-145, gnl|canFam2|chr9 (49197582-49197737)
               

               
               1-145, gnl|danRer3|chrNA (108654040-108653890)
               

               
               1-145, gnl|echTel1|scaffold_318383 (124806-124956)
               

               
               1-145, gnl|fr1|chrUn (60382527-60382372)
               

               
               1-145, gnl|galGal2|chr19 (5077846-5078001)
               

               
               1-145, gnl|hg17|chr17 (1585614-1585769)
               

               
               1-145, gnl|Hg17|chr17 (1585617-1585761)
               

               
               1-145, gnl|loxAfr1|scaffold_42234 (11581-11424)
               

               
               1-145, gnl|mm7|chr11 (75526421-75526265)
               

               
               1-145, gnl|monDom2|scaffold_86 (2891338-2891493)
               

               
               1-145, gnl|panTro1|chr19 (1727931-1728086)
               

               
               1-145, gnl|rheMac2|chr16 (1531540-1531695)
               

               
               1-145, gnl|rn3|chr10 (62775038-62774882)
               

               
               1-145, gnl|tetNig1|chr16 (3514792-3514660)
               

               
               1-145, gnl|xenTro1|scaffold_50 (3007650-3007500)
               


               
               324-882, gnl|bosTau2|chr19 (17367419-17367991)
               

               
               324-882, gnl|Hg17|chr17 (1587407-1587980)
               

               
               324-882, gnl|Mm7|chr11 (75523665-75523134)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-145, gnl|bosTau2|chr19 (17365409-17365553)
               

               
               1-145, gnl|canFam2|chr9 (49197582-49197737)
               

               
               1-145, gnl|danRer3|chrNA (108654040-108653890)
               

               
               1-145, gnl|echTel1|scaffold_318383 (124806-124956)
               

               
               1-145, gnl|fr1|chrUn (60382527-60382372)
               

               
               1-145, gnl|galGal2|chr19 (5077846-5078001)
               

               
               1-145, gnl|hg17|chr17 (1585614-1585769)
               

               
               1-145, gnl|Hg17|chr17 (1585617-1585761)
               

               
               1-145, gnl|loxAfr1|scaffold_42234 (11581-11424)
               

               
               1-145, gnl|mm7|chr11 (75526421-75526265)
               

               
               1-145, gnl|monDom2|scaffold_86 (2891338-2891493)
               

               
               1-145, gnl|panTro1|chr19 (1727931-1728086)
               

               
               1-145, gnl|rheMac2|chr16 (1531540-1531695)
               

               
               1-145, gnl|rn3|chr10 (62775038-62774882)
               

               
               1-145, gnl|tetNig1|chr16 (3514792-3514660)
               

               
               1-145, gnl|xenTro1|scaffold_50 (3007650-3007500)
               


               
               324-882, gnl|bosTau2|chr19 (17367419-17367991)
               

               
               324-882, gnl|Hg17|chr17 (1587407-1587980)
               

               
               324-882, gnl|Mm7|chr11 (75523665-75523134)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               eep (0.122564)

	324-442, - strand, RNAz p=0.664114
	768-882, - strand, RNAz p=0.69491

	1-145, gnl\|bosTau2\|chr19 (17365409-17365553)
	1-145, gnl\|canFam2\|chr9 (49197582-49197737)
	1-145, gnl\|danRer3\|chrNA (108654040-108653890)
	1-145, gnl\|echTel1\|scaffold_318383 (124806-124956)
	1-145, gnl\|fr1\|chrUn (60382527-60382372)
	1-145, gnl\|galGal2\|chr19 (5077846-5078001)
	1-145, gnl\|hg17\|chr17 (1585614-1585769)
	1-145, gnl\|Hg17\|chr17 (1585617-1585761)
	1-145, gnl\|loxAfr1\|scaffold_42234 (11581-11424)
	1-145, gnl\|mm7\|chr11 (75526421-75526265)
	1-145, gnl\|monDom2\|scaffold_86 (2891338-2891493)
	1-145, gnl\|panTro1\|chr19 (1727931-1728086)
	1-145, gnl\|rheMac2\|chr16 (1531540-1531695)
	1-145, gnl\|rn3\|chr10 (62775038-62774882)
	1-145, gnl\|tetNig1\|chr16 (3514792-3514660)
	1-145, gnl\|xenTro1\|scaffold_50 (3007650-3007500)

	324-882, gnl\|bosTau2\|chr19 (17367419-17367991)
	324-882, gnl\|Hg17\|chr17 (1587407-1587980)
	324-882, gnl\|Mm7\|chr11 (75523665-75523134)