Non-Coding RNA Search

Ss1.1-Mixg-0004b05.3

Sequence:


               
               GAAGGAGTGTACCTGGGCCATCTCTAGCACCCCCGGGCACCGGGTCAAGCTGACCTTCCT
GGAGATGGACATCGAGTCCCAGCCCGAGTGCGCCTATGACCACTTGGAGGTGTACGACGG
GCGTGACGCCAAGGCCCCCGTCCTGGGCCGCTTCTGTGGGAGCAAGAAACCCGAGCCCGT
CCTGGCCACAGGCAGCCGCATGTTCCTGCGCTTCTACTCAGACAACTCCGTGCAGAGGAA
GGGCTTCCAGGCCGCCCACTCCACAGAATGTGGAGGCCAGGTTCGGGCAGAGGTGAAGAC
CAAGGACCTTTACTCCCACGCCCAGTTTGGCGACAACAACTACCCTGGGGGGGTGGACTG
CGAGTGGGTCATCGTGGCCGAGGAAGGCTACGGCGTGGAGCTGGTGTTCCAGACCTTCGA
GGTGGAGGAGGAGACTGACTGCGGCTATGACTACATGGAGCTCTTCGACGGTTACGACAG
CACGGCCCCCAGGCTGGGGCGCTACTGCGGCTCAGGGCCTCCCGAGGAGGTGTACTCGGC
GGGAGATTCTGTCCTGGTGAAATTCCACTCGGATGACACCATCACCAAAAAAGGCTTCCA
CCTGCGGTACACCAGCACAAAGTTCCAAGACACGCTGCACAGCCGGAAGTGACCACTGCC
CTCACACGGCCGGGGACGGGAGGCCCGCTGCCCTCGGTCACCTGAGCCGGACAGCGTCCC
CATCCCCCAGGTGCCAGGACCTGGGGCCGATGGTCTGGGTGGAGCTGTCCTCAGGAGGTG
GGGCATTGGACTCCTCCATGAGCCACTGCCCCTCGATCCCTTCCTCCCTCGCCCCTGCGG
GAGCGAGGGGCCAGGGCCAGGGAGCCAGAGCTTTCACTGAGACACTTGAAGTGGCCATTC
CTCTCTGGGGGCCTTCCCCGGTGGGTGAGGGTCAGGCAGCAGGACCCGCCCACCTTCCCT
GCCGGTCTCTACACGCTGTATTGTGTATAGCCAGTGGCATATCTTTATCGTAATGTACAT
TTCCCACCCCTTCTCCAACCCAGATTTGGTTTTATTTTAAGCCCCCACTTCCCTCTGTTT
CCTGGGGCGTGTGTTTCCATACTCATCCCACAGGAGCCACAGTGGGAAGATGAAGGGGAG
GGGGTGGGGCAGCAAGACAGGGCTTCTCTCAGGCCCAGCGGCTGGCTGGCCACACCAGGG
CACCCCAGCCAATAAACCGAAAGTGTTACAGCCTGTAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGAGTGTACCTGGGCCATCTCTAGCACCCCCGGGCACCGGGTCAAGCTGACCTTCCT
GGAGATGGACATCGAGTCCCAGCCCGAGTGCGCCTATGACCACTTGGAGGTGTACGACGG
GCGTGACGCCAAGGCCCCCGTCCTGGGCCGCTTCTGTGGGAGCAAGAAACCCGAGCCCGT
CCTGGCCACAGGCAGCCGCATGTTCCTGCGCTTCTACTCAGACAACTCCGTGCAGAGGAA
GGGCTTCCAGGCCGCCCACTCCACAGAATGTGGAGGCCAGGTTCGGGCAGAGGTGAAGAC
CAAGGACCTTTACTCCCACGCCCAGTTTGGCGACAACAACTACCCTGGGGGGGTGGACTG
CGAGTGGGTCATCGTGGCCGAGGAAGGCTACGGCGTGGAGCTGGTGTTCCAGACCTTCGA
GGTGGAGGAGGAGACTGACTGCGGCTATGACTACATGGAGCTCTTCGACGGTTACGACAG
CACGGCCCCCAGGCTGGGGCGCTACTGCGGCTCAGGGCCTCCCGAGGAGGTGTACTCGGC
GGGAGATTCTGTCCTGGTGAAATTCCACTCGGATGACACCATCACCAAAAAAGGCTTCCA
CCTGCGGTACACCAGCACAAAGTTCCAAGACACGCTGCACAGCCGGAAGTGACCACTGCC
CTCACACGGCCGGGGACGGGAGGCCCGCTGCCCTCGGTCACCTGAGCCGGACAGCGTCCC
CATCCCCCAGGTGCCAGGACCTGGGGCCGATGGTCTGGGTGGAGCTGTCCTCAGGAGGTG
GGGCATTGGACTCCTCCATGAGCCACTGCCCCTCGATCCCTTCCTCCCTCGCCCCTGCGG
GAGCGAGGGGCCAGGGCCAGGGAGCCAGAGCTTTCACTGAGACACTTGAAGTGGCCATTC
CTCTCTGGGGGCCTTCCCCGGTGGGTGAGGGTCAGGCAGCAGGACCCGCCCACCTTCCCT
GCCGGTCTCTACACGCTGTATTGTGTATAGCCAGTGGCATATCTTTATCGTAATGTACAT
TTCCCACCCCTTCTCCAACCCAGATTTGGTTTTATTTTAAGCCCCCACTTCCCTCTGTTT
CCTGGGGCGTGTGTTTCCATACTCATCCCACAGGAGCCACAGTGGGAAGATGAAGGGGAG
GGGGTGGGGCAGCAAGACAGGGCTTCTCTCAGGCCCAGCGGCTGGCTGGCCACACCAGGG
CACCCCAGCCAATAAACCGAAAGTGTTACAGCCTGTAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|619861|gb|AAC41710.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|619861|gb|AAC41710.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               724-876, - strand, RNAz p=0.999675
               

               
               1031-1172, + strand, RNAz p=0.995654

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               724-876, - strand, RNAz p=0.999675
               

               
               1031-1172, + strand, RNAz p=0.995654

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006129, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006129, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               264-517, gnl|bosTau2|chr26 (7765480-7765227)
               

               
               264-517, gnl|canFam2|chr28 (12777974-12778251)
               

               
               264-517, gnl|danRer3|chr1 (17104866-17105140)
               

               
               264-517, gnl|dasNov1|scaffold_2775 (43380-43659)
               

               
               264-517, gnl|echTel1|scaffold_320902 (115638-115912)
               

               
               264-517, gnl|fr1|chrUn (18918216-18917940)
               

               
               264-517, gnl|galGal2|chr6 (15824063-15824335)
               

               
               264-517, gnl|hg17|chr10 (98119804-98120084)
               

               
               264-517, gnl|Hg17|chr10 (98120065-98119812)
               

               
               264-517, gnl|loxAfr1|scaffold_2693 (9536-9818)
               

               
               264-517, gnl|mm7|chr19 (40980051-40980333)
               

               
               264-517, gnl|Mm7|chr19 (40980312-40980059)
               

               
               264-517, gnl|monDom2|scaffold_14 (26302007-26301725)
               

               
               264-517, gnl|oryCun1|scaffold_213497 (4324-4036)
               

               
               264-517, gnl|panTro1|chr8 (99811647-99811930)
               

               
               264-517, gnl|rheMac2|chr9 (95910149-95910429)
               

               
               264-517, gnl|rn3|chr1 (246375636-246375920)
               

               
               264-517, gnl|tetNig1|chr18 (7653214-7652940)
               

               
               264-517, gnl|xenTro1|scaffold_171 (1740880-1741154)
               


               
               724-1236, gnl|bosTau2|chr8 (31343636-31343121)
               

               
               724-1236, gnl|Hg17|chr8 (22125283-22125785)
               

               
               724-1236, gnl|Mm7|chr14 (65119497-65119041)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-517, gnl|bosTau2|chr26 (7765480-7765227)
               

               
               264-517, gnl|canFam2|chr28 (12777974-12778251)
               

               
               264-517, gnl|danRer3|chr1 (17104866-17105140)
               

               
               264-517, gnl|dasNov1|scaffold_2775 (43380-43659)
               

               
               264-517, gnl|echTel1|scaffold_320902 (115638-115912)
               

               
               264-517, gnl|fr1|chrUn (18918216-18917940)
               

               
               264-517, gnl|galGal2|chr6 (15824063-15824335)
               

               
               264-517, gnl|hg17|chr10 (98119804-98120084)
               

               
               264-517, gnl|Hg17|chr10 (98120065-98119812)
               

               
               264-517, gnl|loxAfr1|scaffold_2693 (9536-9818)
               

               
               264-517, gnl|mm7|chr19 (40980051-40980333)
               

               
               264-517, gnl|Mm7|chr19 (40980312-40980059)
               

               
               264-517, gnl|monDom2|scaffold_14 (26302007-26301725)
               

               
               264-517, gnl|oryCun1|scaffold_213497 (4324-4036)
               

               
               264-517, gnl|panTro1|chr8 (99811647-99811930)
               

               
               264-517, gnl|rheMac2|chr9 (95910149-95910429)
               

               
               264-517, gnl|rn3|chr1 (246375636-246375920)
               

               
               264-517, gnl|tetNig1|chr18 (7653214-7652940)
               

               
               264-517, gnl|xenTro1|scaffold_171 (1740880-1741154)
               


               
               724-1236, gnl|bosTau2|chr8 (31343636-31343121)
               

               
               724-1236, gnl|Hg17|chr8 (22125283-22125785)
               

               
               724-1236, gnl|Mm7|chr14 (65119497-65119041)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               amn (0.417711)
               

               
               elu (0.385356)
               

               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)

	724-876, - strand, RNAz p=0.999675
	1031-1172, + strand, RNAz p=0.995654

	264-517, gnl\|bosTau2\|chr26 (7765480-7765227)
	264-517, gnl\|canFam2\|chr28 (12777974-12778251)
	264-517, gnl\|danRer3\|chr1 (17104866-17105140)
	264-517, gnl\|dasNov1\|scaffold_2775 (43380-43659)
	264-517, gnl\|echTel1\|scaffold_320902 (115638-115912)
	264-517, gnl\|fr1\|chrUn (18918216-18917940)
	264-517, gnl\|galGal2\|chr6 (15824063-15824335)
	264-517, gnl\|hg17\|chr10 (98119804-98120084)
	264-517, gnl\|Hg17\|chr10 (98120065-98119812)
	264-517, gnl\|loxAfr1\|scaffold_2693 (9536-9818)
	264-517, gnl\|mm7\|chr19 (40980051-40980333)
	264-517, gnl\|Mm7\|chr19 (40980312-40980059)
	264-517, gnl\|monDom2\|scaffold_14 (26302007-26301725)
	264-517, gnl\|oryCun1\|scaffold_213497 (4324-4036)
	264-517, gnl\|panTro1\|chr8 (99811647-99811930)
	264-517, gnl\|rheMac2\|chr9 (95910149-95910429)
	264-517, gnl\|rn3\|chr1 (246375636-246375920)
	264-517, gnl\|tetNig1\|chr18 (7653214-7652940)
	264-517, gnl\|xenTro1\|scaffold_171 (1740880-1741154)

	724-1236, gnl\|bosTau2\|chr8 (31343636-31343121)
	724-1236, gnl\|Hg17\|chr8 (22125283-22125785)
	724-1236, gnl\|Mm7\|chr14 (65119497-65119041)

	amn (0.417711)
	elu (0.385356)
	nms (0.213858)
	ton (0.1755)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	lnt (0.142308)