Non-Coding RNA Search

Ss1.1-Mixg-0004b07.3

Sequence:


               
               ATCCCACCCTCCCCACTGGCCTGCCCGCCTGTGCCTCCGCCCCCACCCCGTTCACCTTCG
CCCCTGCCAGGCCACCCGCCTGCACCTGCACGGTCCCCAAGGTTGCGCCGAGGCCAGTCA
GCTGACAAGCTGGGTACAGGTGAGCGGCTGGACGGGGAGCTGGGGCGCCGCAGCCGCGGG
CCGGACTCTGAGCTGGTGGTCATGCGGCGGCTGCATCTGTCTGAGCGCCGAGACTCCTTC
AAGAAGCAGGAGGCTGTGCAGGAGGTGAGCTTTGATGAGCCACCTGAGGAGGCTGCAGGG
CCACCCCCCTTAGTGCCGCAGATTGCCGTGGAGGGGGCTGAGGCCATTCCAGGAGCCCTT
GGACCTGCTGGGAAAGACTAATCCGTCCTACCTGGCCTCTCCCTGGCCTGGAAGCTGTGC
ATTTTTCTGGAATGTTTTTTTCCATAAATTGACATCTGGATGGAGACTGAGCCTGTGACA
CCTGGAAGATGATGAGAAGCCATCACAGTTATTGCTGGAAGGTGTAGAAAGTGCCTCCTC
CCTTGTGTTCTGGAGCCGATCAATCAGGGGGTCATAGGGGCAGGAATGGGAGACCAGGGT
GTTATTGTAAATAGCAGCAAATCCCTGCAACTAATTTATTACTTTTTATAAGCGATAGCC
AGACTGAGCCGCCACTGTTAAGGCGGCTGCCCAGGTCCTGCTCCATGCACCTGGGACCCA
TTTGTAGACCCTGCCCCCTGGGCTGAGAAGGAAGCACTTTGGACAAGTCACGTGTGTTCA
TGTTTTCTCGTTTTTCTGTACTTTTAAAGTTGTTTTGTGTTACTTGATCCCATCCCTGAC
TCAAGACCCACAGGTTTGAAGGGATACAGCCAAGCTTACCTGTCCAGGCCCAATTTGGGT
GACTTGGAGAGTCCACAAACAGAGTTCCCCCTCCACGGCAAAGCAAAGTAATCCTGATGA
TGGACTGGATTCTGAAGGCTACTACCCATCATCATTGTCTCCATCCCTCAGCCAACTGTG
CCTGAGTCTGCGTCCAATCCGATGGGCTTAAGGGGGTGTGGGCTGGGGCTTTGATGTATG
TGTAGAAGTTCACCAGATTTAGGCAGAGGGGTTGCCCACTTCACAGCCAGACACTGGTGC
CCTGGCAGGCAGAGGCCTCAAAGGGCACTTCAGGGTAGCATAAGGATGTCCACCCTGAAC
AAGATTTTTTTGTGTTTGATGCCCACCGGGGTGAACCCTTGACCATGATGTGTCTGAAAC
CCCTCCCCCCGCTAGGGGGGTGCCCTCCATGTGTCAGAGCCTCCCCGGGATGAAATTTGA
GTGAGAAAGTCCAACCAGGGGTCAGTGAGGCCAAAGTTTGAATCTTGGCTTCACATTTGG
CTCTGGGAAAATGGCTTCCCAGCTCTGTGCCTCGGTTTCCTTGTGTTTACAAAGCTAATC
CCAATGACTATTTATTAAGCACCTACTGTATGCCAAGCGCTTTTACTCGTGGCTTCTCCC
TCAGCCAGCCTTAAGAAGGCTAGAAGTGGTGTTCTCATCCTCATTTTACAGACAAATAAC
TAAGGTCTGGGGAGAGGCAGAGATTTGTCCCATGATTGCCTGGTGAGAGTCATGCAGCCA
GGCTCTGTCTCTCTGGAGCTTGGATCTAATGTCAGAGCAGATTCCAGCTCTCTCCCCTGT
GATGCTAAGTGACCCACTGGGCACCTCAGAGCCTCCCTTTCTCCCATTTGTGGGTTGTTA
GCAAGATCTCTGTGTCCTACGTGGTGAGGGCACTTTCCAGGCACTGCAGCCCAGTCTGCA
TTCCTTCTGGAGACACCCATGCAGCACCACCTAGTGTTGGAGCTAGACCAAGGCTGTGCA
TGACTTGCTCCCGCCTTCCACCCCGGAGCTGACAGTGAATAAAAGCCCACATTTACAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCCACCCTCCCCACTGGCCTGCCCGCCTGTGCCTCCGCCCCCACCCCGTTCACCTTCG
CCCCTGCCAGGCCACCCGCCTGCACCTGCACGGTCCCCAAGGTTGCGCCGAGGCCAGTCA
GCTGACAAGCTGGGTACAGGTGAGCGGCTGGACGGGGAGCTGGGGCGCCGCAGCCGCGGG
CCGGACTCTGAGCTGGTGGTCATGCGGCGGCTGCATCTGTCTGAGCGCCGAGACTCCTTC
AAGAAGCAGGAGGCTGTGCAGGAGGTGAGCTTTGATGAGCCACCTGAGGAGGCTGCAGGG
CCACCCCCCTTAGTGCCGCAGATTGCCGTGGAGGGGGCTGAGGCCATTCCAGGAGCCCTT
GGACCTGCTGGGAAAGACTAATCCGTCCTACCTGGCCTCTCCCTGGCCTGGAAGCTGTGC
ATTTTTCTGGAATGTTTTTTTCCATAAATTGACATCTGGATGGAGACTGAGCCTGTGACA
CCTGGAAGATGATGAGAAGCCATCACAGTTATTGCTGGAAGGTGTAGAAAGTGCCTCCTC
CCTTGTGTTCTGGAGCCGATCAATCAGGGGGTCATAGGGGCAGGAATGGGAGACCAGGGT
GTTATTGTAAATAGCAGCAAATCCCTGCAACTAATTTATTACTTTTTATAAGCGATAGCC
AGACTGAGCCGCCACTGTTAAGGCGGCTGCCCAGGTCCTGCTCCATGCACCTGGGACCCA
TTTGTAGACCCTGCCCCCTGGGCTGAGAAGGAAGCACTTTGGACAAGTCACGTGTGTTCA
TGTTTTCTCGTTTTTCTGTACTTTTAAAGTTGTTTTGTGTTACTTGATCCCATCCCTGAC
TCAAGACCCACAGGTTTGAAGGGATACAGCCAAGCTTACCTGTCCAGGCCCAATTTGGGT
GACTTGGAGAGTCCACAAACAGAGTTCCCCCTCCACGGCAAAGCAAAGTAATCCTGATGA
TGGACTGGATTCTGAAGGCTACTACCCATCATCATTGTCTCCATCCCTCAGCCAACTGTG
CCTGAGTCTGCGTCCAATCCGATGGGCTTAAGGGGGTGTGGGCTGGGGCTTTGATGTATG
TGTAGAAGTTCACCAGATTTAGGCAGAGGGGTTGCCCACTTCACAGCCAGACACTGGTGC
CCTGGCAGGCAGAGGCCTCAAAGGGCACTTCAGGGTAGCATAAGGATGTCCACCCTGAAC
AAGATTTTTTTGTGTTTGATGCCCACCGGGGTGAACCCTTGACCATGATGTGTCTGAAAC
CCCTCCCCCCGCTAGGGGGGTGCCCTCCATGTGTCAGAGCCTCCCCGGGATGAAATTTGA
GTGAGAAAGTCCAACCAGGGGTCAGTGAGGCCAAAGTTTGAATCTTGGCTTCACATTTGG
CTCTGGGAAAATGGCTTCCCAGCTCTGTGCCTCGGTTTCCTTGTGTTTACAAAGCTAATC
CCAATGACTATTTATTAAGCACCTACTGTATGCCAAGCGCTTTTACTCGTGGCTTCTCCC
TCAGCCAGCCTTAAGAAGGCTAGAAGTGGTGTTCTCATCCTCATTTTACAGACAAATAAC
TAAGGTCTGGGGAGAGGCAGAGATTTGTCCCATGATTGCCTGGTGAGAGTCATGCAGCCA
GGCTCTGTCTCTCTGGAGCTTGGATCTAATGTCAGAGCAGATTCCAGCTCTCTCCCCTGT
GATGCTAAGTGACCCACTGGGCACCTCAGAGCCTCCCTTTCTCCCATTTGTGGGTTGTTA
GCAAGATCTCTGTGTCCTACGTGGTGAGGGCACTTTCCAGGCACTGCAGCCCAGTCTGCA
TTCCTTCTGGAGACACCCATGCAGCACCACCTAGTGTTGGAGCTAGACCAAGGCTGTGCA
TGACTTGCTCCCGCCTTCCACCCCGGAGCTGACAGTGAATAAAAGCCCACATTTACAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K1C6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K1C6_MOUSE

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               40-159, - strand, RNAz p=0.898085
               

               
               647-749, - strand, RNAz p=0.971236
               

               
               1073-1183, - strand, RNAz p=0.783373
               

               
               1273-1430, - strand, RNAz p=0.999984
               

               
               1471-1588, - strand, RNAz p=0.996242

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.898085
               

               
               647-749, - strand, RNAz p=0.971236
               

               
               1073-1183, - strand, RNAz p=0.783373
               

               
               1273-1430, - strand, RNAz p=0.999984
               

               
               1471-1588, - strand, RNAz p=0.996242

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1919, gnl|bosTau2|chr7 (4289638-4287714)
               

               
               1-1919, gnl|Hg17|chr19 (18121156-18123497)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1919, gnl|bosTau2|chr7 (4289638-4287714)
               

               
               1-1919, gnl|Hg17|chr19 (18121156-18123497)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fhi (0.339155)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               jej (0.0989218)

	40-159, - strand, RNAz p=0.898085
	647-749, - strand, RNAz p=0.971236
	1073-1183, - strand, RNAz p=0.783373
	1273-1430, - strand, RNAz p=0.999984
	1471-1588, - strand, RNAz p=0.996242

	1-1919, gnl\|bosTau2\|chr7 (4289638-4287714)
	1-1919, gnl\|Hg17\|chr19 (18121156-18123497)

	fhi (0.339155)
	fcc (0.197785)
	ill (0.175593)
	cag (0.151194)
	lnt (0.142308)
	jej (0.0989218)