Non-Coding RNA Search

Ss1.1-Mixg-0004c04.5

Sequence:


               
               GCAGGTGCAGCTAAAAAGCAAAAAAAAAAAAAAACAAAAAAAACCAAAACAATTTGGTGA
AGAATTCTTGCATTTACTACCCTCCTTTGAAAGAAGTAATGAGAAGGGCAAAAGGGACCA
CTTTGAATTTGGACAAGGGAAAAAACAATTCTTGCCAGTTTTGTTTCAATCCTAGTTGTT
AGAACAAGGTTAAACCTTCACAATCTTGAAAATTCTTGGATGTTCTAATTGAACATTTTA
CACATTTAAAGTTGTACAATGGTGCTTTAAGTATCACTGTAGCATATGACAGGCTTTGTA
CAGACAGGTAAAATCTTTTCTGAGTGTCGAAATGTGGAAACACCATCTCTTCATCTTTAA
CTTGAAATCAAAACTATCAGATTTTATTTTTTTATAATTTAAGGAAGGTGAAGTTAGGGG
ACTAGAAGACTTCTGAATTGGCTTGTTGAGATCCAGTGATTTAAATGTAGCCAGTTTGTT
GGGACTTCATAGGTAAAATTATATTTGTGTATATAACTGTTAACTAATCTGTAAATTGTA
ATAAATATATTTACAATTATTAAATTTACATGATTTTTTGGTTCAACTTTATATTGTATT
TTGCATTGTTTGGGGAATTAGCAGGATTTTCGAAATCAAGTGTTTCTTGGGAGCAGTATA
GACTTAAAGGTGCTAATATAAATTTCTGTGGCTTAAAAAGGTTATGGGACATGTAAATAG
CACCTCCTCTAACTGAAGGGGAGGAATGGTAAGGGGGTAAATATAACTGCGGACCACATT
TTGGTAATGGAAGAGAGAATTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGTGCAGCTAAAAAGCAAAAAAAAAAAAAAACAAAAAAAACCAAAACAATTTGGTGA
AGAATTCTTGCATTTACTACCCTCCTTTGAAAGAAGTAATGAGAAGGGCAAAAGGGACCA
CTTTGAATTTGGACAAGGGAAAAAACAATTCTTGCCAGTTTTGTTTCAATCCTAGTTGTT
AGAACAAGGTTAAACCTTCACAATCTTGAAAATTCTTGGATGTTCTAATTGAACATTTTA
CACATTTAAAGTTGTACAATGGTGCTTTAAGTATCACTGTAGCATATGACAGGCTTTGTA
CAGACAGGTAAAATCTTTTCTGAGTGTCGAAATGTGGAAACACCATCTCTTCATCTTTAA
CTTGAAATCAAAACTATCAGATTTTATTTTTTTATAATTTAAGGAAGGTGAAGTTAGGGG
ACTAGAAGACTTCTGAATTGGCTTGTTGAGATCCAGTGATTTAAATGTAGCCAGTTTGTT
GGGACTTCATAGGTAAAATTATATTTGTGTATATAACTGTTAACTAATCTGTAAATTGTA
ATAAATATATTTACAATTATTAAATTTACATGATTTTTTGGTTCAACTTTATATTGTATT
TTGCATTGTTTGGGGAATTAGCAGGATTTTCGAAATCAAGTGTTTCTTGGGAGCAGTATA
GACTTAAAGGTGCTAATATAAATTTCTGTGGCTTAAAAAGGTTATGGGACATGTAAATAG
CACCTCCTCTAACTGAAGGGGAGGAATGGTAAGGGGGTAAATATAACTGCGGACCACATT
TTGGTAATGGAAGAGAGAATTTAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               56-802, gnl|bosTau2|chr16 (1993214-1993986)
               


               
               58-585, gnl|bosTau2|chr11 (24095237-24094695)
               

               
               58-585, gnl|Hg17|chr1 (201104685-201104150)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-802, gnl|bosTau2|chr16 (1993214-1993986)
               


               
               58-585, gnl|bosTau2|chr11 (24095237-24094695)
               

               
               58-585, gnl|Hg17|chr1 (201104685-201104150)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               sme (1.22175)
               

               
               rec (0.692281)
               

               
               sin (0.524843)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (1.22175)
               

               
               rec (0.692281)
               

               
               sin (0.524843)
               

               
               thg (0.380373)
               

               
               sag (0.36543)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

	56-802, gnl\|bosTau2\|chr16 (1993214-1993986)

	58-585, gnl\|bosTau2\|chr11 (24095237-24094695)
	58-585, gnl\|Hg17\|chr1 (201104685-201104150)

	sme (1.22175)
	rec (0.692281)
	sin (0.524843)
	thg (0.380373)
	sag (0.36543)
	mgp (0.230681)
	nms (0.213858)
	hea (0.204499)
	aor (0.195274)
	gul (0.177588)
	duo (0.172801)
	mga (0.160205)
	fco (0.157208)
	cli (0.152812)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	jca (0.11396)