Non-Coding RNA Search

Ss1.1-Mixg-0004d07.5

Sequence:


               
               CATCCTAGACCCGTCCCCCGAGGCAGCCGTGGTGTGCGGCAATGTGCTCACGTCGCAGCG
TGTGGTGGACGTCATCCTGGGGGCCTTCGGAGCCTGTGCCGCCTCCCAGGGCTGCATGAA
CAACGTGACCTTGGGCAATGCCCACATGGGCTACTATGAGACCGTGGCAGGTGGCGCGGG
TGCGGGCCCTGGCTGGCACGGGCGCAGCGGTGTGCACAGCCACATGACCAACACACGCAT
CACCGACCCGGAGGTCCTGGAGAGCAGGTACCCGGTCATTCTGCGTCGCTTCGAGCTGCG
ACGGGGGTCCGGGGGCCGAGGCCGCTTCCGGGGAGGTGATGGTGTCATCCGTGAGCTGCT
TTTTCGTGAGGAGGCCCTGCTGTCCGTCCTGACAGAGCGCCGCGCCTTCCAGCCCTACGG
CCTCCTTGGGGGTGAGCCCGGTGCCCGCGGGCTAAACCTGCTGATCCGCAAGGATGGCCG
GACGGTGAATCTGGGCGGGAAGACCTCGGTGCCCGTGTACCCCGGGGACGTGTTCTGCCT
TCACACTCCAGGAGGCGGGGGCTATGGGGACCCGGAAGACCCTGCCCCACCGCTGGGGTC
ACCCTCGCAGCCCTTGGCCTTCCCGGAGCGCGGCAGCGTCTATGAGTACCGCAGGGCCCA
GGAGGCTGTGTGAGAAAGGGCCACACAATAAAGATCCCTGAGGTCCCCTGTTCCCATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCTAGACCCGTCCCCCGAGGCAGCCGTGGTGTGCGGCAATGTGCTCACGTCGCAGCG
TGTGGTGGACGTCATCCTGGGGGCCTTCGGAGCCTGTGCCGCCTCCCAGGGCTGCATGAA
CAACGTGACCTTGGGCAATGCCCACATGGGCTACTATGAGACCGTGGCAGGTGGCGCGGG
TGCGGGCCCTGGCTGGCACGGGCGCAGCGGTGTGCACAGCCACATGACCAACACACGCAT
CACCGACCCGGAGGTCCTGGAGAGCAGGTACCCGGTCATTCTGCGTCGCTTCGAGCTGCG
ACGGGGGTCCGGGGGCCGAGGCCGCTTCCGGGGAGGTGATGGTGTCATCCGTGAGCTGCT
TTTTCGTGAGGAGGCCCTGCTGTCCGTCCTGACAGAGCGCCGCGCCTTCCAGCCCTACGG
CCTCCTTGGGGGTGAGCCCGGTGCCCGCGGGCTAAACCTGCTGATCCGCAAGGATGGCCG
GACGGTGAATCTGGGCGGGAAGACCTCGGTGCCCGTGTACCCCGGGGACGTGTTCTGCCT
TCACACTCCAGGAGGCGGGGGCTATGGGGACCCGGAAGACCCTGCCCCACCGCTGGGGTC
ACCCTCGCAGCCCTTGGCCTTCCCGGAGCGCGGCAGCGTCTATGAGTACCGCAGGGCCCA
GGAGGCTGTGTGAGAAAGGGCCACACAATAAAGATCCCTGAGGTCCCCTGTTCCCATGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10441918|gb|AAG17236.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10441918|gb|AAG17236.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               90-269, gnl|bosTau2|chr14 (175900-176078)
               

               
               90-269, gnl|Hg17|chr8 (145179236-145179058)
               

               
               90-269, gnl|Mm7|chr15 (76380085-76379910)
               


               
               282-423, gnl|bosTau2|chr14 (176248-176389)
               

               
               282-423, gnl|Hg17|chr8 (145178953-145178810)
               

               
               282-423, gnl|Mm7|chr15 (76379814-76379675)
               


               
               510-720, gnl|bosTau2|chr14 (176930-177141)
               

               
               510-720, gnl|Hg17|chr8 (145178390-145178166)
               

               
               510-720, gnl|Mm7|chr15 (76379350-76379144)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-269, gnl|bosTau2|chr14 (175900-176078)
               

               
               90-269, gnl|Hg17|chr8 (145179236-145179058)
               

               
               90-269, gnl|Mm7|chr15 (76380085-76379910)
               


               
               282-423, gnl|bosTau2|chr14 (176248-176389)
               

               
               282-423, gnl|Hg17|chr8 (145178953-145178810)
               

               
               282-423, gnl|Mm7|chr15 (76379814-76379675)
               


               
               510-720, gnl|bosTau2|chr14 (176930-177141)
               

               
               510-720, gnl|Hg17|chr8 (145178390-145178166)
               

               
               510-720, gnl|Mm7|chr15 (76379350-76379144)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	90-269, gnl\|bosTau2\|chr14 (175900-176078)
	90-269, gnl\|Hg17\|chr8 (145179236-145179058)
	90-269, gnl\|Mm7\|chr15 (76380085-76379910)

	282-423, gnl\|bosTau2\|chr14 (176248-176389)
	282-423, gnl\|Hg17\|chr8 (145178953-145178810)
	282-423, gnl\|Mm7\|chr15 (76379814-76379675)

	510-720, gnl\|bosTau2\|chr14 (176930-177141)
	510-720, gnl\|Hg17\|chr8 (145178390-145178166)
	510-720, gnl\|Mm7\|chr15 (76379350-76379144)