Ss1.1-Mixg-0004h08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCAGGTTCGGCGCGCGCTGCGGCCTGAGACCGAGGTCTGAGGAGAGCTCAGACGCGCA GCTGGGAGCTGAGAAGTTTCGTGTATTCCGTGCCGAAGGCCGGAGCAGGGGAGTAGAGAG GTGGACGCTGCGAGGGGCTCTGCACTCCGTCCGGGGTCGAGCGCGCGCGGGTCCAGCGGA CTGAGGTTCGGAACGCTCAGCCGGCCAGAGCGGGTAGCGCTGCAGGCCGAGTATTGAACA CTGAGTAATGGCTGTGCAGATGCAGCTTGAATCAAATGCAGATACTTCGGTGGAAGAGGA GAGCTTTGGCCCACAGCCTATTTCACGATTAGAGCAATGTGGCATAAATGCCAATGATGT CAAAAAATTGGAAGAAGCTGGATTCCACACCGTGGAGGCTGTTGCCTATGCACCAAAGAA GGAGCTAATAAATATTAAGGGGATTAGTGAAGCCAAAGCTGATAAAATTCTGACCGAGGC AGCTAAATTAGTTCCAATGGGTTTCACCACTGCTACTGAGTTCCACCAAAGGCGATCCGA GATCATACAAATTACTACTGGCTCCAAAGAGCTTGACAAGCTACTTCAAGGAGGAATTGA GACTGGATCCATCACAGAGATGTTTGGAGAATTCCGAACTGGGAAAACCCAGATCTGTCA TACATTGGCTGTAACATGCCAGCTTCCCATCGACCGAGGTGGAGGTGAAGGAAAGGCCAT GTACATTGACACTGAGGGTACCTTCAGGCCAGAACGGCTGCTAGCAGTGGCTGAGAGATA CGGCCTCTCTGGCAGTGATGTCCTGGATAACGTAGCATATGCCCGGGCGTTCAACACAGA CCACCAGACCCAGCTCCTTTATCAAGCATCAGCCATGATGGTAGAGTCCAGGTATGCACT GCTAATTATAGACAGTGCCACCGCCCTCTACAGAACGGACTATTCGGGTCGAGGTGAGCT TTCAGCCAGGCAGATGCACTTGGCCAGGTTTCTGCGGATGCTTCTGCGACTTGCTGATGA GTTTGGTGTAGCAGTGGTAATCACCAACCAGGTGGTAGCCCAAGTGGATGGAGCAGCCAT GTTTGCTGCAGATCCTAAAAAACCTATTGGAGGAAATATCATTGCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCAGGTTCGGCGCGCGCTGCGGCCTGAGACCGAGGTCTGAGGAGAGCTCAGACGCGCA GCTGGGAGCTGAGAAGTTTCGTGTATTCCGTGCCGAAGGCCGGAGCAGGGGAGTAGAGAG GTGGACGCTGCGAGGGGCTCTGCACTCCGTCCGGGGTCGAGCGCGCGCGGGTCCAGCGGA CTGAGGTTCGGAACGCTCAGCCGGCCAGAGCGGGTAGCGCTGCAGGCCGAGTATTGAACA CTGAGTAATGGCTGTGCAGATGCAGCTTGAATCAAATGCAGATACTTCGGTGGAAGAGGA GAGCTTTGGCCCACAGCCTATTTCACGATTAGAGCAATGTGGCATAAATGCCAATGATGT CAAAAAATTGGAAGAAGCTGGATTCCACACCGTGGAGGCTGTTGCCTATGCACCAAAGAA GGAGCTAATAAATATTAAGGGGATTAGTGAAGCCAAAGCTGATAAAATTCTGACCGAGGC AGCTAAATTAGTTCCAATGGGTTTCACCACTGCTACTGAGTTCCACCAAAGGCGATCCGA GATCATACAAATTACTACTGGCTCCAAAGAGCTTGACAAGCTACTTCAAGGAGGAATTGA GACTGGATCCATCACAGAGATGTTTGGAGAATTCCGAACTGGGAAAACCCAGATCTGTCA TACATTGGCTGTAACATGCCAGCTTCCCATCGACCGAGGTGGAGGTGAAGGAAAGGCCAT GTACATTGACACTGAGGGTACCTTCAGGCCAGAACGGCTGCTAGCAGTGGCTGAGAGATA CGGCCTCTCTGGCAGTGATGTCCTGGATAACGTAGCATATGCCCGGGCGTTCAACACAGA CCACCAGACCCAGCTCCTTTATCAAGCATCAGCCATGATGGTAGAGTCCAGGTATGCACT GCTAATTATAGACAGTGCCACCGCCCTCTACAGAACGGACTATTCGGGTCGAGGTGAGCT TTCAGCCAGGCAGATGCACTTGGCCAGGTTTCTGCGGATGCTTCTGCGACTTGCTGATGA GTTTGGTGTAGCAGTGGTAATCACCAACCAGGTGGTAGCCCAAGTGGATGGAGCAGCCAT GTTTGCTGCAGATCCTAAAAAACCTATTGGAGGAAATATCATTGCTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 311-429, + strand, RNAz p=0.62191 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 311-429, + strand, RNAz p=0.62191 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 1-212, gnl|bosTau2|chr10 (27255756-27255978) | |
| 1-212, gnl|canFam2|chr30 (10831417-10831744) | |
| 1-212, gnl|dasNov1|scaffold_48054 (6816-6483) | |
| 1-212, gnl|echTel1|scaffold_128473 (645-348) | |
| 1-212, gnl|hg17|chr15 (38774492-38774825) | |
| 1-212, gnl|Hg17|chr15 (38774675-38774896) | |
| 1-212, gnl|loxAfr1|scaffold_6409 (58337-58667) | |
| 1-212, gnl|mm7|chr2 (118853523-118853816) | |
| 1-212, gnl|Mm7|chr2 (118853689-118853870) | |
| 1-212, gnl|oryCun1|scaffold_191980 (644-326) | |
| 1-212, gnl|panTro1|chr16 (38686343-38686676) | |
| 1-212, gnl|rheMac2|chr7 (19063022-19063358) | |
| 1-212, gnl|rn3|chr3 (105521558-105521841) | |
| 311-472, gnl|bosTau2|chr10 (27261123-27261282) | |
| 311-472, gnl|canFam2|chr30 (10840708-10840883) | |
| 311-472, gnl|danRer3|chr20 (53809115-53809274) | |
| 311-472, gnl|dasNov1|scaffold_12206 (5187-5357) | |
| 311-472, gnl|echTel1|scaffold_280709 (3128-2953) | |
| 311-472, gnl|fr1|chrUn (304027526-304027364) | |
| 311-472, gnl|galGal2|chr5 (2507647-2507485) | |
| 311-472, gnl|hg17|chr15 (38780526-38780701) | |
| 311-472, gnl|Hg17|chr15 (38780532-38780691) | |
| 311-472, gnl|loxAfr1|scaffold_217800 (741-916) | |
| 311-472, gnl|mm7|chr2 (118859435-118859605) | |
| 311-472, gnl|Mm7|chr2 (118859441-118859594) | |
| 311-472, gnl|monDom2|scaffold_12 (1487977-1487802) | |
| 311-472, gnl|oryCun1|scaffold_6495 (1231-1056) | |
| 311-472, gnl|panTro1|chr16 (38692403-38692578) | |
| 311-472, gnl|rheMac2|chr7 (19069859-19070034) | |
| 311-472, gnl|rn3|chr3 (105529826-105529995) | |
| 311-472, gnl|tetNig1|chr14 (529558-529705) | |
| 311-472, gnl|xenTro1|scaffold_933 (57613-57453) | |
| 890-1021, gnl|bosTau2|chr10 (26624480-26624611) | |
| 890-1021, gnl|canFam2|chr30 (10864918-10865069) | |
| 890-1021, gnl|danRer3|chr20 (53816963-53817098) | |
| 890-1021, gnl|dasNov1|scaffold_53529 (132-283) | |
| 890-1021, gnl|echTel1|scaffold_320134 (55722-55572) | |
| 890-1021, gnl|fr1|chrUn (304025388-304025230) | |
| 890-1021, gnl|galGal2|chr5 (2503174-2503018) | |
| 890-1021, gnl|hg17|chr15 (38808978-38809129) | |
| 890-1021, gnl|Hg17|chr15 (38808993-38809124) | |
| 890-1021, gnl|loxAfr1|scaffold_124945 (688-537) | |
| 890-1021, gnl|mm7|chr2 (118874906-118875057) | |
| 890-1021, gnl|Mm7|chr2 (118874921-118875052) | |
| 890-1021, gnl|monDom2|scaffold_12 (1465321-1465163) | |
| 890-1021, gnl|panTro1|chr16 (38719714-38719865) | |
| 890-1021, gnl|rheMac2|chr7 (19099394-19099545) | |
| 890-1021, gnl|rn3|chr3 (105544764-105544915) | |
| 890-1021, gnl|tetNig1|chr14 (531063-531217) | |
| 890-1021, gnl|xenTro1|scaffold_933 (52445-52288) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-212, gnl|bosTau2|chr10 (27255756-27255978) | |
| 1-212, gnl|canFam2|chr30 (10831417-10831744) | |
| 1-212, gnl|dasNov1|scaffold_48054 (6816-6483) | |
| 1-212, gnl|echTel1|scaffold_128473 (645-348) | |
| 1-212, gnl|hg17|chr15 (38774492-38774825) | |
| 1-212, gnl|Hg17|chr15 (38774675-38774896) | |
| 1-212, gnl|loxAfr1|scaffold_6409 (58337-58667) | |
| 1-212, gnl|mm7|chr2 (118853523-118853816) | |
| 1-212, gnl|Mm7|chr2 (118853689-118853870) | |
| 1-212, gnl|oryCun1|scaffold_191980 (644-326) | |
| 1-212, gnl|panTro1|chr16 (38686343-38686676) | |
| 1-212, gnl|rheMac2|chr7 (19063022-19063358) | |
| 1-212, gnl|rn3|chr3 (105521558-105521841) | |
| 311-472, gnl|bosTau2|chr10 (27261123-27261282) | |
| 311-472, gnl|canFam2|chr30 (10840708-10840883) | |
| 311-472, gnl|danRer3|chr20 (53809115-53809274) | |
| 311-472, gnl|dasNov1|scaffold_12206 (5187-5357) | |
| 311-472, gnl|echTel1|scaffold_280709 (3128-2953) | |
| 311-472, gnl|fr1|chrUn (304027526-304027364) | |
| 311-472, gnl|galGal2|chr5 (2507647-2507485) | |
| 311-472, gnl|hg17|chr15 (38780526-38780701) | |
| 311-472, gnl|Hg17|chr15 (38780532-38780691) | |
| 311-472, gnl|loxAfr1|scaffold_217800 (741-916) | |
| 311-472, gnl|mm7|chr2 (118859435-118859605) | |
| 311-472, gnl|Mm7|chr2 (118859441-118859594) | |
| 311-472, gnl|monDom2|scaffold_12 (1487977-1487802) | |
| 311-472, gnl|oryCun1|scaffold_6495 (1231-1056) | |
| 311-472, gnl|panTro1|chr16 (38692403-38692578) | |
| 311-472, gnl|rheMac2|chr7 (19069859-19070034) | |
| 311-472, gnl|rn3|chr3 (105529826-105529995) | |
| 311-472, gnl|tetNig1|chr14 (529558-529705) | |
| 311-472, gnl|xenTro1|scaffold_933 (57613-57453) | |
| 890-1021, gnl|bosTau2|chr10 (26624480-26624611) | |
| 890-1021, gnl|canFam2|chr30 (10864918-10865069) | |
| 890-1021, gnl|danRer3|chr20 (53816963-53817098) | |
| 890-1021, gnl|dasNov1|scaffold_53529 (132-283) | |
| 890-1021, gnl|echTel1|scaffold_320134 (55722-55572) | |
| 890-1021, gnl|fr1|chrUn (304025388-304025230) | |
| 890-1021, gnl|galGal2|chr5 (2503174-2503018) | |
| 890-1021, gnl|hg17|chr15 (38808978-38809129) | |
| 890-1021, gnl|Hg17|chr15 (38808993-38809124) | |
| 890-1021, gnl|loxAfr1|scaffold_124945 (688-537) | |
| 890-1021, gnl|mm7|chr2 (118874906-118875057) | |
| 890-1021, gnl|Mm7|chr2 (118874921-118875052) | |
| 890-1021, gnl|monDom2|scaffold_12 (1465321-1465163) | |
| 890-1021, gnl|panTro1|chr16 (38719714-38719865) | |
| 890-1021, gnl|rheMac2|chr7 (19099394-19099545) | |
| 890-1021, gnl|rn3|chr3 (105544764-105544915) | |
| 890-1021, gnl|tetNig1|chr14 (531063-531217) | |
| 890-1021, gnl|xenTro1|scaffold_933 (52445-52288) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |