Non-Coding RNA Search

Ss1.1-Mixg-0005a04.3

Sequence:


               
               ATAAAATTTGTTGCCAACTATATAACAACAGTGTTTGTGAAGCTGCTTCTAAAGTAGCAA
AGGGTAGGGTCATAAGCATACTGTGAAATTTGAGATTTTTCCTCCCTGGTAGAATTGTGA
TAGTTACTCTTCATATATTAAGTATTCCACATCTTGCCCTCTTTGCTCACTCCCTGTTTA
TCCTTTTAGACTTAGGTCTTTTTAGAAAGAGCCTGGATTAGAAGAAAGCCTATCTGCATA
TTTATTAGCTTCCTCTATTGTTCTGGTCCAGGCTATGGTCATGCCTTTGACCTCCCTGTG
ACCCAGTCCCACCTAGGCCTCTACCCAGCAGAGAAACCAAACAGCAACCCCAGTTCCTCC
AGACTTCTTACAGAGGCGTGAGCCCTGTGCTGACACACGTGAGGTTCTTTGCTATCTTTT
GTAGATGTCACAATACAAAATATTACTGCAATCTAACCTAGAGAAAATTGCTGAAATGAC
TCACATTATTTGGGACCAATTCATTTGGGACCAATTCAGTGGCTTGCTTAAAAACATTTA
ATTTCACTTTGTTTCACTTCCACACTTCACTCTTGAGCTTTGGAAAGACTATTTCTGTGA
AGGATCTCTTATGTTGTATTGACAATTCATAAGGAAAAGAGACTTCCCAGTGTTCTCACT
TCTTCCTGAACTGTAGCTGTAGTATTCTTCACTAGTACTATTAGATACCTGTGTACAGGA
AGTAGACAGTGATTCGGGTTAACATTTCATATTAAAGAATGTATTTGTAAAATGTAACAA
GATGAGTAGTTAACTTTTTTTAAGCTCTGAAAAAATTAAAGATTATGTGTTAGATTTAAA
ATTACAGTGAAATGTCTTAATACTACTTTTGTGGCTAACAAAGGTTGTGCATTTATGTAA
AAATATTTACAGAATGCCCTCAATAAAGGATACTAAAGAGAGATTTTGCTTTTAATCTTT
AGAACTGTAACAATGCTGATGTTGTTATACAGTTATTAATTCTTCAGAAGTTCTCTAAGA
TGTCAAATATAATTTTTCTTCCTTTCAGAGACAAGTAACACCTGCTCTGTGATTCACTAT
TACAGCAAACTCTAATTTTGTCATTAAATATTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAATTTGTTGCCAACTATATAACAACAGTGTTTGTGAAGCTGCTTCTAAAGTAGCAA
AGGGTAGGGTCATAAGCATACTGTGAAATTTGAGATTTTTCCTCCCTGGTAGAATTGTGA
TAGTTACTCTTCATATATTAAGTATTCCACATCTTGCCCTCTTTGCTCACTCCCTGTTTA
TCCTTTTAGACTTAGGTCTTTTTAGAAAGAGCCTGGATTAGAAGAAAGCCTATCTGCATA
TTTATTAGCTTCCTCTATTGTTCTGGTCCAGGCTATGGTCATGCCTTTGACCTCCCTGTG
ACCCAGTCCCACCTAGGCCTCTACCCAGCAGAGAAACCAAACAGCAACCCCAGTTCCTCC
AGACTTCTTACAGAGGCGTGAGCCCTGTGCTGACACACGTGAGGTTCTTTGCTATCTTTT
GTAGATGTCACAATACAAAATATTACTGCAATCTAACCTAGAGAAAATTGCTGAAATGAC
TCACATTATTTGGGACCAATTCATTTGGGACCAATTCAGTGGCTTGCTTAAAAACATTTA
ATTTCACTTTGTTTCACTTCCACACTTCACTCTTGAGCTTTGGAAAGACTATTTCTGTGA
AGGATCTCTTATGTTGTATTGACAATTCATAAGGAAAAGAGACTTCCCAGTGTTCTCACT
TCTTCCTGAACTGTAGCTGTAGTATTCTTCACTAGTACTATTAGATACCTGTGTACAGGA
AGTAGACAGTGATTCGGGTTAACATTTCATATTAAAGAATGTATTTGTAAAATGTAACAA
GATGAGTAGTTAACTTTTTTTAAGCTCTGAAAAAATTAAAGATTATGTGTTAGATTTAAA
ATTACAGTGAAATGTCTTAATACTACTTTTGTGGCTAACAAAGGTTGTGCATTTATGTAA
AAATATTTACAGAATGCCCTCAATAAAGGATACTAAAGAGAGATTTTGCTTTTAATCTTT
AGAACTGTAACAATGCTGATGTTGTTATACAGTTATTAATTCTTCAGAAGTTCTCTAAGA
TGTCAAATATAATTTTTCTTCCTTTCAGAGACAAGTAACACCTGCTCTGTGATTCACTAT
TACAGCAAACTCTAATTTTGTCATTAAATATTTTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               838-950, - strand, RNAz p=0.999077

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               838-950, - strand, RNAz p=0.999077

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               34-1116, gnl|bosTau2|chr21 (23564892-23565981)
               

               
               34-1116, gnl|Hg17|chr14 (24349769-24348713)
               

               
               34-1116, gnl|Mm7|chr12 (42819733-42818646)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-1116, gnl|bosTau2|chr21 (23564892-23565981)
               

               
               34-1116, gnl|Hg17|chr14 (24349769-24348713)
               

               
               34-1116, gnl|Mm7|chr12 (42819733-42818646)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fco (0.471624)
               

               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               jej (0.0989218)

	34-1116, gnl\|bosTau2\|chr21 (23564892-23565981)
	34-1116, gnl\|Hg17\|chr14 (24349769-24348713)
	34-1116, gnl\|Mm7\|chr12 (42819733-42818646)

	fco (0.471624)
	vin (0.332557)
	lin (0.291206)
	aor (0.195274)
	col (0.195008)
	sag (0.182715)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	csk (0.140746)
	hlv (0.139256)
	jej (0.0989218)