Non-Coding RNA Search

Ss1.1-Mixg-0005d03.5

Sequence:


               
               CTGAAATTCTACTCTGTCTGCTGTTGCCATTGCCACCATTCTCAGGACCCTCACCATGAA
AGGCCTTCTGCTGCTCACCCTGTCTGCTCTGTTCTGCTGGGTCTCAGCTGACATTCGCTG
TCACTCCTGCTACAAGGTCCCCGTGCTGGGCTGTGTGGACCGGCAGTCTTGCCTACTGGA
AAAAGGACACCAGTGCATAACCACGAATGTGTACCTTGGGAAGATGTGGGTTTTCTCCAA
CCTCCGCTGTGGCACACCAGAAGAGCCCTGTCGGGAAGCCTTCAACCAGACCAGCCACAA
GCTGGGCCTGACCTATAACACCACCTGCTGCAACAAGGACAGCTGCAACAGCCCAGCTCC
TCGGCCCACTCCGGCCCTGGCCCTGGTCCTCTTCACCTCCTTGGCTGGCCTTGGCCTCTG
GCTGTTGCACTGAGACTCATTCCATGGCTGCCCCTCCTCCCACTTCCCTTAGCCTGAGCT
TCTCTCCTTGTATCTTGTATCCTCTGCGTCCCTTGGCTCAGAAAAGCATTTCTCCAGACC
CTTCCCATGTCTTTAGTTAGACAGTGGTCTCCGATCCATCCTTCCCCTGCCCACCCTCCA
CTCTCCTTTTCCAGAGTCTCTTCCCAATTCTGTCCACACCCCGCCAGATCCTCCACTGCC
TCCTAGAAGGGCTCCCCACTTTGCCTCCTGCACGCCCCCGTGCCCTTCTTGGGGAGGGAT
GGGGACCTGGGCCTGAAAGGGGGTTTCTGTCCTGTCCCCAGTGTAGGCTTCCTGGAAGGA
CCCCATGGCCTCACCGTATAAGCTGAGTCTCCCAAACCCTGGCTCCCATATCTACCTCAG
CCACACGCTCACCCCTTTCATTTTGAGTAATAAATATCTGTATCTGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAAATTCTACTCTGTCTGCTGTTGCCATTGCCACCATTCTCAGGACCCTCACCATGAA
AGGCCTTCTGCTGCTCACCCTGTCTGCTCTGTTCTGCTGGGTCTCAGCTGACATTCGCTG
TCACTCCTGCTACAAGGTCCCCGTGCTGGGCTGTGTGGACCGGCAGTCTTGCCTACTGGA
AAAAGGACACCAGTGCATAACCACGAATGTGTACCTTGGGAAGATGTGGGTTTTCTCCAA
CCTCCGCTGTGGCACACCAGAAGAGCCCTGTCGGGAAGCCTTCAACCAGACCAGCCACAA
GCTGGGCCTGACCTATAACACCACCTGCTGCAACAAGGACAGCTGCAACAGCCCAGCTCC
TCGGCCCACTCCGGCCCTGGCCCTGGTCCTCTTCACCTCCTTGGCTGGCCTTGGCCTCTG
GCTGTTGCACTGAGACTCATTCCATGGCTGCCCCTCCTCCCACTTCCCTTAGCCTGAGCT
TCTCTCCTTGTATCTTGTATCCTCTGCGTCCCTTGGCTCAGAAAAGCATTTCTCCAGACC
CTTCCCATGTCTTTAGTTAGACAGTGGTCTCCGATCCATCCTTCCCCTGCCCACCCTCCA
CTCTCCTTTTCCAGAGTCTCTTCCCAATTCTGTCCACACCCCGCCAGATCCTCCACTGCC
TCCTAGAAGGGCTCCCCACTTTGCCTCCTGCACGCCCCCGTGCCCTTCTTGGGGAGGGAT
GGGGACCTGGGCCTGAAAGGGGGTTTCTGTCCTGTCCCCAGTGTAGGCTTCCTGGAAGGA
CCCCATGGCCTCACCGTATAAGCTGAGTCTCCCAAACCCTGGCTCCCATATCTACCTCAG
CCACACGCTCACCCCTTTCATTTTGAGTAATAAATATCTGTATCTGAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q545T2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q545T2_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               337-551, - strand, RNAz p=0.769044

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               337-551, - strand, RNAz p=0.769044

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               218-877, gnl|bosTau2|chr23 (23368070-23367414)
               

               
               218-877, gnl|Hg17|chr6 (31795067-31794414)
               

               
               218-877, gnl|Mm7|chr17 (33166409-33167127)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               218-877, gnl|bosTau2|chr23 (23368070-23367414)
               

               
               218-877, gnl|Hg17|chr6 (31795067-31794414)
               

               
               218-877, gnl|Mm7|chr17 (33166409-33167127)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (0.877501)
               

               
               eep (0.490256)
               

               
               eye (0.170503)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.877501)
               

               
               eep (0.490256)
               

               
               eye (0.170503)

	218-877, gnl\|bosTau2\|chr23 (23368070-23367414)
	218-877, gnl\|Hg17\|chr6 (31795067-31794414)
	218-877, gnl\|Mm7\|chr17 (33166409-33167127)