Non-Coding RNA Search

Ss1.1-Mixg-0005e02.5

Sequence:


               
               GCGGCCGCCGCCAGAGCGATGTTCCCACAGAGCCGGCACCCGACGCCGCACCAGGCTGCA
GGCCAGCCCTTCAAGTTCACTATCCCGGAGTCCCTGGACCGGATTAAAGAGGAGTTTCAG
TTCCTGCAGGCTCAGTATCACAGCCTTAAATTGGAATGTGAGAAACTGGCAAGTGAAAAG
ACAGAAATGCAGAGGCACTACGTGATGTATTATGAAATGTCATATGGATTAAACATAGAA
ATGCATAAACAGACCGAAATCGCCAAGAGATTGAATACGATTTGTGCACAAGTCATCCCA
TTTCTGTCTCAGGAACATCAACAACAGGTGGCCCAGGCTGTTGAACGAGCCAAACAGGTG
ACCATGGCAGAGCTGAATGCCATCATCGGGCAGCAGCAGTTGCAAGCCCAGCATCTTTCT
CATGGCCACGGACCTCCAGTGCCCCTCACCCCTCACCCTTCGGGACTTCAGCCTCCTGGA
ATCCCGCCCCTCGGCGGCAGTGCCGGCCTCCTGGCGCTGTCTAGTGCTCTGAGTGGGCAG
TCTCACTTGGCAATTAAAGATGACAAGAAGCACCACGATGCAGAGCACCACAGAGGTGAG
AGGCCTGGCAAGCCAGATTAGGACCTTGTCCTAACACTCTTACAGTGCTGCAAAGTTTGT
GCACCGCTAAAGAGAGCCCCAACCCATACAGAGAGCAAACAATGAGCTAAGAGGAACTGT
CGCAAAGCTTGGCCACTGAAACACAGTTCACCCTGGAGGTTTTCAGGGTTTAACGTGGGC
ATCTGTAGATTTCTCGATCTCTTTAGATTGCAGGCATCTTGACATCTTGGCAACTGCCTC
GTTAATGCCAGTGGCCTGTACCATATTATGGAAAACTGTTAACTGCTTAATTGGGTAATT
TTCAAAGAAAGTAATGTTGTTAAATGGGGCGAAATAAGAAGTTAAATTTGAAAGTGAATG
TGTTCAAATGAAAGGTTTGATAATTGCATCTGTTACTACTTAGTTTCATAGGCTTTAATT
CTAGTATGCATTAAATATTGGGCAAAATTGCACTTGACTAATTTTTTGAAAAAAAAAAGT
AATTTATTCTGTCAAGAAATTTTTAAAAAATAGGCTTTTGTGTATGGTTAAGCTGTAAAT
CTTATGTTTACAAAATACTGTAATTTTCAGGAAATCACTGTATTAGGAATGTGCAATGAC
TTATATAAATAAAAGCCATTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCCGCCAGAGCGATGTTCCCACAGAGCCGGCACCCGACGCCGCACCAGGCTGCA
GGCCAGCCCTTCAAGTTCACTATCCCGGAGTCCCTGGACCGGATTAAAGAGGAGTTTCAG
TTCCTGCAGGCTCAGTATCACAGCCTTAAATTGGAATGTGAGAAACTGGCAAGTGAAAAG
ACAGAAATGCAGAGGCACTACGTGATGTATTATGAAATGTCATATGGATTAAACATAGAA
ATGCATAAACAGACCGAAATCGCCAAGAGATTGAATACGATTTGTGCACAAGTCATCCCA
TTTCTGTCTCAGGAACATCAACAACAGGTGGCCCAGGCTGTTGAACGAGCCAAACAGGTG
ACCATGGCAGAGCTGAATGCCATCATCGGGCAGCAGCAGTTGCAAGCCCAGCATCTTTCT
CATGGCCACGGACCTCCAGTGCCCCTCACCCCTCACCCTTCGGGACTTCAGCCTCCTGGA
ATCCCGCCCCTCGGCGGCAGTGCCGGCCTCCTGGCGCTGTCTAGTGCTCTGAGTGGGCAG
TCTCACTTGGCAATTAAAGATGACAAGAAGCACCACGATGCAGAGCACCACAGAGGTGAG
AGGCCTGGCAAGCCAGATTAGGACCTTGTCCTAACACTCTTACAGTGCTGCAAAGTTTGT
GCACCGCTAAAGAGAGCCCCAACCCATACAGAGAGCAAACAATGAGCTAAGAGGAACTGT
CGCAAAGCTTGGCCACTGAAACACAGTTCACCCTGGAGGTTTTCAGGGTTTAACGTGGGC
ATCTGTAGATTTCTCGATCTCTTTAGATTGCAGGCATCTTGACATCTTGGCAACTGCCTC
GTTAATGCCAGTGGCCTGTACCATATTATGGAAAACTGTTAACTGCTTAATTGGGTAATT
TTCAAAGAAAGTAATGTTGTTAAATGGGGCGAAATAAGAAGTTAAATTTGAAAGTGAATG
TGTTCAAATGAAAGGTTTGATAATTGCATCTGTTACTACTTAGTTTCATAGGCTTTAATT
CTAGTATGCATTAAATATTGGGCAAAATTGCACTTGACTAATTTTTTGAAAAAAAAAAGT
AATTTATTCTGTCAAGAAATTTTTAAAAAATAGGCTTTTGTGTATGGTTAAGCTGTAAAT
CTTATGTTTACAAAATACTGTAATTTTCAGGAAATCACTGTATTAGGAATGTGCAATGAC
TTATATAAATAAAAGCCATTTTTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5SQA8_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5SQA8_MOUSE

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               470-589, - strand, RNAz p=0.539755
               

               
               741-858, + strand, RNAz p=0.852977

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               470-589, - strand, RNAz p=0.539755
               

               
               741-858, + strand, RNAz p=0.852977

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of CR612105, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR612105, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               63-227, gnl|bosTau2|chr10 (30769490-30769653)
               

               
               63-227, gnl|Hg17|chr19 (3012238-3008677)
               

               
               63-227, gnl|Mm7|chr10 (81355645-81358644)
               


               
               390-1224, gnl|bosTau2|chr13 (35598811-35597966)
               

               
               390-1224, gnl|Hg17|chr9 (81478771-81477944)
               

               
               390-1224, gnl|Mm7|chr4 (71592116-71591286)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-227, gnl|bosTau2|chr10 (30769490-30769653)
               

               
               63-227, gnl|Hg17|chr19 (3012238-3008677)
               

               
               63-227, gnl|Mm7|chr10 (81355645-81358644)
               


               
               390-1224, gnl|bosTau2|chr13 (35598811-35597966)
               

               
               390-1224, gnl|Hg17|chr9 (81478771-81477944)
               

               
               390-1224, gnl|Mm7|chr4 (71592116-71591286)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               ebs (0.236602)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

	470-589, - strand, RNAz p=0.539755
	741-858, + strand, RNAz p=0.852977

	63-227, gnl\|bosTau2\|chr10 (30769490-30769653)
	63-227, gnl\|Hg17\|chr19 (3012238-3008677)
	63-227, gnl\|Mm7\|chr10 (81355645-81358644)

	390-1224, gnl\|bosTau2\|chr13 (35598811-35597966)
	390-1224, gnl\|Hg17\|chr9 (81478771-81477944)
	390-1224, gnl\|Mm7\|chr4 (71592116-71591286)