Ss1.1-Mixg-0005h01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGAGCGCGGCGGCGGAGGCGGCAGAGCGCGCGGACGCCGAGTTGGTTTTGAAATTGCC CTGAAAGCCGAGGGCCGCCCTCCTCCTCCACCTCCGCTGTCTGGCGTCCACCTCGGCTCC TACCTGGGTGCTCCCGAGTTAAATGGCTGAGAAGCAGATCAGCCTGCCAGCCAAGCTCAT CAACGGCGGCATCGCCGGGCTGATCGGGGTCACCTGCGTGTTCCCCATCGACCTGGCCAA GACGAGGCTGCAGAACCAGCAGAATGGGCAGCGCATGTACACCAGCATGTCCGACTGCCT CATCAAGACTATCCGCTCAGAGGGCTACTTCGGGATGTACCGAGGAGCTGCTGTGAACCT CACCCTCGTCACCCCCGAGAAGGCCATCAAGCTGGCAGCCAACGACTTCTTCCGGCATCA GCTCTCCAAGGACGGGCAGAAGCTGACGTTGTTGAAGGAGATGCTGGCGGGCTGCGGCGC GGGCACCTGCCAGGTGATTGTGACCACCCCCATGGAGATGCTGAAGATCCAGCTCCAGGA CGCAGGCCGCATCGCCGCCCAGAAAAAGATCCTGGCTGCCCATGCTCGGCTCTCGGCCCA GGGGGCTGCCCAGCCCTCGGTGGAAGCGCCAGCCACCCCTCGACCCACGGCCACCCAGCT GACCCGGGACCTGCTGCGGAGCCGAGGAATCGCGGGCCTCTACAAGGGCCTGGGGGCCAC GCTGCTCAGGGACGTCCCCTTCTCCATCGTCTACTTCCCACTCTTCGCCAACCTGGACCA GCTGGGCCGGCCAGCGTCCGGGGAGAAGTCTCCTTTCTATGTGTCCTTCCTGGCCGGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGAGCGCGGCGGCGGAGGCGGCAGAGCGCGCGGACGCCGAGTTGGTTTTGAAATTGCC CTGAAAGCCGAGGGCCGCCCTCCTCCTCCACCTCCGCTGTCTGGCGTCCACCTCGGCTCC TACCTGGGTGCTCCCGAGTTAAATGGCTGAGAAGCAGATCAGCCTGCCAGCCAAGCTCAT CAACGGCGGCATCGCCGGGCTGATCGGGGTCACCTGCGTGTTCCCCATCGACCTGGCCAA GACGAGGCTGCAGAACCAGCAGAATGGGCAGCGCATGTACACCAGCATGTCCGACTGCCT CATCAAGACTATCCGCTCAGAGGGCTACTTCGGGATGTACCGAGGAGCTGCTGTGAACCT CACCCTCGTCACCCCCGAGAAGGCCATCAAGCTGGCAGCCAACGACTTCTTCCGGCATCA GCTCTCCAAGGACGGGCAGAAGCTGACGTTGTTGAAGGAGATGCTGGCGGGCTGCGGCGC GGGCACCTGCCAGGTGATTGTGACCACCCCCATGGAGATGCTGAAGATCCAGCTCCAGGA CGCAGGCCGCATCGCCGCCCAGAAAAAGATCCTGGCTGCCCATGCTCGGCTCTCGGCCCA GGGGGCTGCCCAGCCCTCGGTGGAAGCGCCAGCCACCCCTCGACCCACGGCCACCCAGCT GACCCGGGACCTGCTGCGGAGCCGAGGAATCGCGGGCCTCTACAAGGGCCTGGGGGCCAC GCTGCTCAGGGACGTCCCCTTCTCCATCGTCTACTTCCCACTCTTCGCCAACCTGGACCA GCTGGGCCGGCCAGCGTCCGGGGAGAAGTCTCCTTTCTATGTGTCCTTCCTGGCCGGCTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 160-290, gnl|bosTau2|chr29 (44798441-44798311) | |
| 160-290, gnl|canFam2|chr27 (48244295-48244495) | |
| 160-290, gnl|canFam2|chr27 (48244503-48244357) | |
| 160-290, gnl|danRer3|chr23 (418845-419004) | |
| 160-290, gnl|danRer3|chrUn (12984337-12984471) | |
| 160-290, gnl|echTel1|scaffold_292275 (15964-15800) | |
| 160-290, gnl|echTel1|scaffold_306213 (3768-3904) | |
| 160-290, gnl|fr1|chrUn (175878004-175878163) | |
| 160-290, gnl|fr1|chrUn (153293632-153293496) | |
| 160-290, gnl|hg17|chr11 (784771-784907) | |
| 160-290, gnl|Hg17|chr11 (784904-784774) | |
| 160-290, gnl|hg17|chr22 (16438321-16438491) | |
| 160-290, gnl|loxAfr1|scaffold_10637 (40331-40164) | |
| 160-290, gnl|loxAfr1|scaffold_114217 (1741-1605) | |
| 160-290, gnl|mm7|chr6 (120811302-120811469) | |
| 160-290, gnl|mm7|chr7 (137851159-137851295) | |
| 160-290, gnl|Mm7|chr7 (137851292-137851162) | |
| 160-290, gnl|monDom2|scaffold_31 (27480587-27480773) | |
| 160-290, gnl|monDom2|scaffold_973 (1268-1096) | |
| 160-290, gnl|oryCun1|scaffold_207514 (589-416) | |
| 160-290, gnl|oryCun1|scaffold_93066 (1378-1247) | |
| 160-290, gnl|panTro1|chr23 (16306372-16306542) | |
| 160-290, gnl|panTro1|chr9 (859087-859223) | |
| 160-290, gnl|rheMac2|chr10 (62269162-62269321) | |
| 160-290, gnl|rheMac2|chr14 (600609-600745) | |
| 160-290, gnl|rn3|chr1 (201775144-201775280) | |
| 160-290, gnl|rn3|chr4 (157438613-157438780) | |
| 160-290, gnl|tetNig1|chr13 (1650387-1650528) | |
| 160-290, gnl|tetNig1|chr13 (10933113-10933249) | |
| 160-290, gnl|xenTro1|scaffold_251 (1535302-1535436) | |
| 554-730, gnl|bosTau2|chr29 (44796721-44796545) | |
| 554-730, gnl|canFam2|chr27 (48251276-48251186) | |
| 554-730, gnl|danRer3|chrUn (14544461-14544351) | |
| 554-730, gnl|echTel1|scaffold_306213 (2064-2181) | |
| 554-730, gnl|fr1|chrUn (153295329-153295209) | |
| 554-730, gnl|galGal2|chrUn (16539037-16538892) | |
| 554-730, gnl|hg17|chr11 (782552-782681) | |
| 554-730, gnl|Hg17|chr11 (782728-782552) | |
| 554-730, gnl|loxAfr1|scaffold_10637 (35110-35216) | |
| 554-730, gnl|mm7|chr7 (137849002-137849131) | |
| 554-730, gnl|Mm7|chr7 (137849178-137849002) | |
| 554-730, gnl|monDom2|scaffold_480 (15157-15008) | |
| 554-730, gnl|oryCun1|scaffold_200425 (202835-202947) | |
| 554-730, gnl|rheMac2|chr14 (598379-598508) | |
| 554-730, gnl|rn3|chr1 (201773032-201773161) | |
| 554-730, gnl|tetNig1|chr13 (10931467-10931587) | |
| 554-730, gnl|xenTro1|scaffold_251 (1528660-1528787) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 160-290, gnl|bosTau2|chr29 (44798441-44798311) | |
| 160-290, gnl|canFam2|chr27 (48244295-48244495) | |
| 160-290, gnl|canFam2|chr27 (48244503-48244357) | |
| 160-290, gnl|danRer3|chr23 (418845-419004) | |
| 160-290, gnl|danRer3|chrUn (12984337-12984471) | |
| 160-290, gnl|echTel1|scaffold_292275 (15964-15800) | |
| 160-290, gnl|echTel1|scaffold_306213 (3768-3904) | |
| 160-290, gnl|fr1|chrUn (175878004-175878163) | |
| 160-290, gnl|fr1|chrUn (153293632-153293496) | |
| 160-290, gnl|hg17|chr11 (784771-784907) | |
| 160-290, gnl|Hg17|chr11 (784904-784774) | |
| 160-290, gnl|hg17|chr22 (16438321-16438491) | |
| 160-290, gnl|loxAfr1|scaffold_10637 (40331-40164) | |
| 160-290, gnl|loxAfr1|scaffold_114217 (1741-1605) | |
| 160-290, gnl|mm7|chr6 (120811302-120811469) | |
| 160-290, gnl|mm7|chr7 (137851159-137851295) | |
| 160-290, gnl|Mm7|chr7 (137851292-137851162) | |
| 160-290, gnl|monDom2|scaffold_31 (27480587-27480773) | |
| 160-290, gnl|monDom2|scaffold_973 (1268-1096) | |
| 160-290, gnl|oryCun1|scaffold_207514 (589-416) | |
| 160-290, gnl|oryCun1|scaffold_93066 (1378-1247) | |
| 160-290, gnl|panTro1|chr23 (16306372-16306542) | |
| 160-290, gnl|panTro1|chr9 (859087-859223) | |
| 160-290, gnl|rheMac2|chr10 (62269162-62269321) | |
| 160-290, gnl|rheMac2|chr14 (600609-600745) | |
| 160-290, gnl|rn3|chr1 (201775144-201775280) | |
| 160-290, gnl|rn3|chr4 (157438613-157438780) | |
| 160-290, gnl|tetNig1|chr13 (1650387-1650528) | |
| 160-290, gnl|tetNig1|chr13 (10933113-10933249) | |
| 160-290, gnl|xenTro1|scaffold_251 (1535302-1535436) | |
| 554-730, gnl|bosTau2|chr29 (44796721-44796545) | |
| 554-730, gnl|canFam2|chr27 (48251276-48251186) | |
| 554-730, gnl|danRer3|chrUn (14544461-14544351) | |
| 554-730, gnl|echTel1|scaffold_306213 (2064-2181) | |
| 554-730, gnl|fr1|chrUn (153295329-153295209) | |
| 554-730, gnl|galGal2|chrUn (16539037-16538892) | |
| 554-730, gnl|hg17|chr11 (782552-782681) | |
| 554-730, gnl|Hg17|chr11 (782728-782552) | |
| 554-730, gnl|loxAfr1|scaffold_10637 (35110-35216) | |
| 554-730, gnl|mm7|chr7 (137849002-137849131) | |
| 554-730, gnl|Mm7|chr7 (137849178-137849002) | |
| 554-730, gnl|monDom2|scaffold_480 (15157-15008) | |
| 554-730, gnl|oryCun1|scaffold_200425 (202835-202947) | |
| 554-730, gnl|rheMac2|chr14 (598379-598508) | |
| 554-730, gnl|rn3|chr1 (201773032-201773161) | |
| 554-730, gnl|tetNig1|chr13 (10931467-10931587) | |
| 554-730, gnl|xenTro1|scaffold_251 (1528660-1528787) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |