Non-Coding RNA Search

Ss1.1-Mixg-0005h09.3

Sequence:


               
               GTCTTTTTATATTGTTTTTTGACAAATCATATTGTATTCTTTTGTACAAAAAAGAACTAC
TTGTATTCTAGAAGAAATATGAAATGCTTAATTTATAAGCGGGCTGGAGATTTTTTCCAA
TATTGTTTTCTTTGAAAATGAAAGGGGATCATCTATTTTAGTTTTGGGGTCTGGGAACTT
TTTGAAAATTTAATTTTTGGACCAATGTTTTGTGAGAGCTAAGGAAGGGCAGGGGTAAAA
TAGGGCTTGATTTTCTCATTCTGTCTAGACCAGCAAACTTCCCTCTGCAAGGCAGGTTCA
GATCACAAACCCAAGAACGTTCGCATCAAAAGTGCTAGTTTGCTTCAGCCCCTAGTAACC
TCAGGACTTGGTTTGAATATAAAAGGTAGACAGCTGATATGTTTTCATGAGTAAATATTG
TCAGCCAGAAAACAGTTGGTGTCAGGTAATACATATTTTTTTAAGCTTTGTTTTGTATTT
ATTTTTCATTTAGTTTTTATTGGGAATGGTTTTCACTAGAACTCTTAGTTCTGCTTAGGT
GTTTTTTGGGGGAGCCCTCTTTTCCATAGTGTAATTCCATTTAAGAGGTTGTCTGCAAGT
CTTTGTAATTCATAGGAAGATTTTAATATCTGAGCGTTCTCAAATTAAGGATATAAGCTT
CCCACACCTTCCTGTTACGACAGATAAAAGCACAGAAAGGACAACCCTTGAAATCATGTA
CGTTGGTCATTTCAGTCTTTTGTACCTGCTTTAAATTCGGTTAGCTTGTTTACTTCATTG
TAAATATCTTTGAGGGTACCTTTGTATTTTGCTTTTGACCTTGGCTCTGTGGTTTGGATG
TCAGCAACTTCCCTGAAAAGCACCAGTATGTTAAGTTCTAATGTCATGATCCCAGGATGG
GTTATTCCTCTTGAATCCAGTTTTCAGTCTCTATGTGTACAGCAGTATTTTTAATAAAGA
ATTACAGAGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTTTTATATTGTTTTTTGACAAATCATATTGTATTCTTTTGTACAAAAAAGAACTAC
TTGTATTCTAGAAGAAATATGAAATGCTTAATTTATAAGCGGGCTGGAGATTTTTTCCAA
TATTGTTTTCTTTGAAAATGAAAGGGGATCATCTATTTTAGTTTTGGGGTCTGGGAACTT
TTTGAAAATTTAATTTTTGGACCAATGTTTTGTGAGAGCTAAGGAAGGGCAGGGGTAAAA
TAGGGCTTGATTTTCTCATTCTGTCTAGACCAGCAAACTTCCCTCTGCAAGGCAGGTTCA
GATCACAAACCCAAGAACGTTCGCATCAAAAGTGCTAGTTTGCTTCAGCCCCTAGTAACC
TCAGGACTTGGTTTGAATATAAAAGGTAGACAGCTGATATGTTTTCATGAGTAAATATTG
TCAGCCAGAAAACAGTTGGTGTCAGGTAATACATATTTTTTTAAGCTTTGTTTTGTATTT
ATTTTTCATTTAGTTTTTATTGGGAATGGTTTTCACTAGAACTCTTAGTTCTGCTTAGGT
GTTTTTTGGGGGAGCCCTCTTTTCCATAGTGTAATTCCATTTAAGAGGTTGTCTGCAAGT
CTTTGTAATTCATAGGAAGATTTTAATATCTGAGCGTTCTCAAATTAAGGATATAAGCTT
CCCACACCTTCCTGTTACGACAGATAAAAGCACAGAAAGGACAACCCTTGAAATCATGTA
CGTTGGTCATTTCAGTCTTTTGTACCTGCTTTAAATTCGGTTAGCTTGTTTACTTCATTG
TAAATATCTTTGAGGGTACCTTTGTATTTTGCTTTTGACCTTGGCTCTGTGGTTTGGATG
TCAGCAACTTCCCTGAAAAGCACCAGTATGTTAAGTTCTAATGTCATGATCCCAGGATGG
GTTATTCCTCTTGAATCCAGTTTTCAGTCTCTATGTGTACAGCAGTATTTTTAATAAAGA
ATTACAGAGAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-117, - strand, RNAz p=0.736026
               

               
               236-354, - strand, RNAz p=0.840228
               

               
               606-722, - strand, RNAz p=0.71875

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.736026
               

               
               236-354, - strand, RNAz p=0.840228
               

               
               606-722, - strand, RNAz p=0.71875

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-973, gnl|bosTau2|chr12 (14924454-14925442)
               

               
               1-973, gnl|Hg17|chr13 (27766502-27767471)
               

               
               1-973, gnl|Mm7|chr5 (146441875-146442899)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-973, gnl|bosTau2|chr12 (14924454-14925442)
               

               
               1-973, gnl|Hg17|chr13 (27766502-27767471)
               

               
               1-973, gnl|Mm7|chr5 (146441875-146442899)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               thg (0.760746)
               

               
               amn (0.417711)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.760746)
               

               
               amn (0.417711)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-117, - strand, RNAz p=0.736026
	236-354, - strand, RNAz p=0.840228
	606-722, - strand, RNAz p=0.71875

	1-973, gnl\|bosTau2\|chr12 (14924454-14925442)
	1-973, gnl\|Hg17\|chr13 (27766502-27767471)
	1-973, gnl\|Mm7\|chr5 (146441875-146442899)

	thg (0.760746)
	amn (0.417711)
	ret (0.257467)
	bla (0.248694)
	tra (0.246184)
	aor (0.195274)
	sag (0.182715)
	fty (0.17584)
	rec (0.17307)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	lnt (0.142308)
	kid (0.129735)
	spc (0.113366)
	eje (0.0988338)
	ldo (0.0970026)