Non-Coding RNA Search

Ss1.1-Mixg-0006b07.3

Sequence:


               
               GAGACCTGGCCAGGCTGCCCATCTGCCCCGCGGCGAGCAAGCCGGCCCCTCCTGGGAGTG
AACTGCCTGGGGGCACTTGATCTTGAGGACTCCCCGTATCCCCCACTGGCGCCAGGGAGT
CACCTGGACCAGAAGGGGAGGAGGACGAAGGCAGGGCGAGGGGCGCCCTGAGGATTAGGC
TCTGGAAGCAAACTGGAGATCAGGCGAGAGGTCCACGTGCAGAGCCGCCGGCCCCGAATC
CCGTTTCTCAGGCTTAGTGACACTCCGCACGCTGCATCACAGGCTGCTGCCTTCTTTGGC
TTTTCGGAGCACCCAGAACCTTCCCCGGGAAGACCAGAGGCCTCAGAGCTTCCAGGACAT
TGTTTCTAAGCACAGAGGCAGCCCAGGAAGAAAAGTCTGCCAGGGCCTCCACGTCAGCTG
GTGACCAGCGCCCGGAAGCTGTTTCCTTCTGTTTCAGAACCAACCTCGGCCTCGCCTCCA
TCCTGTGCACCCTGGAGCCTCTGCTCTCCCACTTGGCTCCTCAACCCTGCAGGCCCTCGG
CTGCTCTTGGCTTGTCTGTTTTTCCCAGTGCAGAAGAGGAAAGGAAAGCGCAGCCCTGGG
CATCGTCAGCGGTGGGGGTCACCGCTGCTTCGGGGGAGGCGCCTGGCATGAGACTAACAC
ATATTTTTATGGGGGGGGGACATCATCAGCCTTCTTCCCCCCTTCTCTTTTCTCCATCCA
GCTTCCTTTTCTGACTCCTGTTCCTCTCTTCGCTCCCTGACTTCCCTTTTCTTGTCAACC
AGCTTGGGCTTTAAGCGCCGTTTGGTGCCCCGCGCTGTGGAGGTGGATTTTGAGCAGAAT
TCTGACTCTGTGGGTGGGGGGAGTGGGGAACTGGGGGAGATCCAGGTTCCGGAGGTCCCC
CCCGGAGGAGTATCTGTAAATGTTTGTGCCTGAGCACCTGCTGTTTCTCTCCAAAGCGGA
ACCTTTCCAGCGCTCTTTCCATTCTGAGTTCATCAGGGAGAAAGTTTCAATAAAGTTCCA
GTGTCTCTTTCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACCTGGCCAGGCTGCCCATCTGCCCCGCGGCGAGCAAGCCGGCCCCTCCTGGGAGTG
AACTGCCTGGGGGCACTTGATCTTGAGGACTCCCCGTATCCCCCACTGGCGCCAGGGAGT
CACCTGGACCAGAAGGGGAGGAGGACGAAGGCAGGGCGAGGGGCGCCCTGAGGATTAGGC
TCTGGAAGCAAACTGGAGATCAGGCGAGAGGTCCACGTGCAGAGCCGCCGGCCCCGAATC
CCGTTTCTCAGGCTTAGTGACACTCCGCACGCTGCATCACAGGCTGCTGCCTTCTTTGGC
TTTTCGGAGCACCCAGAACCTTCCCCGGGAAGACCAGAGGCCTCAGAGCTTCCAGGACAT
TGTTTCTAAGCACAGAGGCAGCCCAGGAAGAAAAGTCTGCCAGGGCCTCCACGTCAGCTG
GTGACCAGCGCCCGGAAGCTGTTTCCTTCTGTTTCAGAACCAACCTCGGCCTCGCCTCCA
TCCTGTGCACCCTGGAGCCTCTGCTCTCCCACTTGGCTCCTCAACCCTGCAGGCCCTCGG
CTGCTCTTGGCTTGTCTGTTTTTCCCAGTGCAGAAGAGGAAAGGAAAGCGCAGCCCTGGG
CATCGTCAGCGGTGGGGGTCACCGCTGCTTCGGGGGAGGCGCCTGGCATGAGACTAACAC
ATATTTTTATGGGGGGGGGACATCATCAGCCTTCTTCCCCCCTTCTCTTTTCTCCATCCA
GCTTCCTTTTCTGACTCCTGTTCCTCTCTTCGCTCCCTGACTTCCCTTTTCTTGTCAACC
AGCTTGGGCTTTAAGCGCCGTTTGGTGCCCCGCGCTGTGGAGGTGGATTTTGAGCAGAAT
TCTGACTCTGTGGGTGGGGGGAGTGGGGAACTGGGGGAGATCCAGGTTCCGGAGGTCCCC
CCCGGAGGAGTATCTGTAAATGTTTGTGCCTGAGCACCTGCTGTTTCTCTCCAAAGCGGA
ACCTTTCCAGCGCTCTTTCCATTCTGAGTTCATCAGGGAGAAAGTTTCAATAAAGTTCCA
GTGTCTCTTTCAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               806-925, - strand, RNAz p=0.999471

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               806-925, - strand, RNAz p=0.999471

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1030, gnl|bosTau2|chr25 (4184071-4183002)
               

               
               3-1030, gnl|Hg17|chr16 (4180463-4179378)
               

               
               3-1030, gnl|Mm7|chr16 (4153016-4152061)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1030, gnl|bosTau2|chr25 (4184071-4183002)
               

               
               3-1030, gnl|Hg17|chr16 (4180463-4179378)
               

               
               3-1030, gnl|Mm7|chr16 (4153016-4152061)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               nms (0.641574)
               

               
               eru (0.480192)
               

               
               che (0.408942)
               

               
               ton (0.351)
               

               
               sme (0.305437)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ese (0.126502)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.641574)
               

               
               eru (0.480192)
               

               
               che (0.408942)
               

               
               ton (0.351)
               

               
               sme (0.305437)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ese (0.126502)

	3-1030, gnl\|bosTau2\|chr25 (4184071-4183002)
	3-1030, gnl\|Hg17\|chr16 (4180463-4179378)
	3-1030, gnl\|Mm7\|chr16 (4153016-4152061)

	nms (0.641574)
	eru (0.480192)
	che (0.408942)
	ton (0.351)
	sme (0.305437)
	hea (0.204499)
	nep (0.183925)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	nca (0.136874)
	ssp (0.13552)
	ste (0.135208)
	ese (0.126502)