Non-Coding RNA Search

Ss1.1-Mixg-0006d04.5

Sequence:


               
               GGCAGTGCTGTGGCTACAGTGCCCCCCTACCTGGGTCCCGACACTCCAGCCCTGCGCACC
CTCAGTGAATACGCCCGGCCCCACGTCATGTCTCCTGGCAATCGCAACCATCCATTCTAC
GTGCCCCTGGGGGCAGTGGACCCGGGGCTCCTGGGTTACAATGTCCCGGCCCTGTACAGC
AGTGACCCAGCGGCCCGGGAGAGGGAGCGGGAAGCCCGTGAACGAGATCTGCGCGACCGC
CTCAAGCCTGGCTTCGAGGTGAAGCCCAGTGAGCTGGAACCCCTACACGGGGTCCCTGGG
CCAGGCCTGGATCCCTTCCCCCGACACGGGGGCCTGGCTCTGCAGCCTGGTCCACCTGGC
TTGCACCCTTTCCCCTTCCATCCGAGTCTGGGGCCGCTGGAGAGAGAACGTCTAGCGCTC
GCAGCTGGGCCAGCCCTGCGCCCTGACATGTCCTACGCTGAGCGTCTGGCAGCTGAGAGG
CAGCACGCGGAAAGGGTAGCCGCCCTGGGCAACGACCCGCTGGCCCGGCTGCAGATGCTT
AATGTGACCCCCCATCACCACCAGCACTCCCACATCCACTCTCACCTGCACCTCCACCAG
CAGGATGCCATCCACGCAGCCTCTGCCTCGGTGCACCCTCTCATTGACCCCCTGGCCTCA
GGGTCTCACCTTACCCGGATCCCCTACCCAGCTGGGACCCTCCCCCACCCCCTTCTTCCT
CACCCTCTGCACGAGAACGAAGTTCTTCGTCACCAGCTCTTTGCTGCTCCTTACCGGGAC
TGCCAGCCTCCCTCTCTGCCCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGTGCTGTGGCTACAGTGCCCCCCTACCTGGGTCCCGACACTCCAGCCCTGCGCACC
CTCAGTGAATACGCCCGGCCCCACGTCATGTCTCCTGGCAATCGCAACCATCCATTCTAC
GTGCCCCTGGGGGCAGTGGACCCGGGGCTCCTGGGTTACAATGTCCCGGCCCTGTACAGC
AGTGACCCAGCGGCCCGGGAGAGGGAGCGGGAAGCCCGTGAACGAGATCTGCGCGACCGC
CTCAAGCCTGGCTTCGAGGTGAAGCCCAGTGAGCTGGAACCCCTACACGGGGTCCCTGGG
CCAGGCCTGGATCCCTTCCCCCGACACGGGGGCCTGGCTCTGCAGCCTGGTCCACCTGGC
TTGCACCCTTTCCCCTTCCATCCGAGTCTGGGGCCGCTGGAGAGAGAACGTCTAGCGCTC
GCAGCTGGGCCAGCCCTGCGCCCTGACATGTCCTACGCTGAGCGTCTGGCAGCTGAGAGG
CAGCACGCGGAAAGGGTAGCCGCCCTGGGCAACGACCCGCTGGCCCGGCTGCAGATGCTT
AATGTGACCCCCCATCACCACCAGCACTCCCACATCCACTCTCACCTGCACCTCCACCAG
CAGGATGCCATCCACGCAGCCTCTGCCTCGGTGCACCCTCTCATTGACCCCCTGGCCTCA
GGGTCTCACCTTACCCGGATCCCCTACCCAGCTGGGACCCTCCCCCACCCCCTTCTTCCT
CACCCTCTGCACGAGAACGAAGTTCTTCGTCACCAGCTCTTTGCTGCTCCTTACCGGGAC
TGCCAGCCTCCCTCTCTGCCCCAT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               200-399, - strand, RNAz p=0.995721
               

               
               234-353, - strand, RNAz p=0.706666
               

               
               480-619, - strand, RNAz p=0.875366

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-399, - strand, RNAz p=0.995721
               

               
               234-353, - strand, RNAz p=0.706666
               

               
               480-619, - strand, RNAz p=0.875366

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               508-613, - strand, RNAmicro p=0.982622
               

               
               239-404, - strand, RNAmicro p=0.929811

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               508-613, - strand, RNAmicro p=0.982622
               

               
               239-404, - strand, RNAmicro p=0.929811

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               200-395, BY795192 Homo sapiens eye Homo sapiens cDNA clone HE0251.seq 5', 
(dbj|BY795192.2|), blast E-value=0, identity=92.35% 
               

               
               200-395, CR997517 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016O0410 5', 
(emb|CR997517.1|), blast E-value=0, identity=92.35% 
               

               
               200-395, 17000424723607 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN409254.1|), blast E-value=0, identity=92.35% 
               

               
               200-395, 17000599937487 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN409270.1|), blast E-value=0, identity=92.35% 
               

               
               200-399, LB0161.CR_D17 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT808631.1|), 
blast E-value=0, identity=95% 
               

               
               200-399, LB0291.CR_I14 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV916308.1|), 
blast E-value=0, identity=93.5%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               200-395, BY795192 Homo sapiens eye Homo sapiens cDNA clone HE0251.seq 5', 
(dbj|BY795192.2|), blast E-value=0, identity=92.35% 
               

               
               200-395, CR997517 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016O0410 5', 
(emb|CR997517.1|), blast E-value=0, identity=92.35% 
               

               
               200-395, 17000424723607 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN409254.1|), blast E-value=0, identity=92.35% 
               

               
               200-395, 17000599937487 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN409270.1|), blast E-value=0, identity=92.35% 
               

               
               200-399, LB0161.CR_D17 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb|DT808631.1|), 
blast E-value=0, identity=95% 
               

               
               200-399, LB0291.CR_I14 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV916308.1|), 
blast E-value=0, identity=93.5%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-619, gnl|bosTau2|chr5 (60335307-60334689)
               

               
               1-619, gnl|Hg17|chr12 (6917983-6918601)
               

               
               1-619, gnl|Mm7|chr6 (124770567-124769949)
               


               
               19-615, gnl|bosTau2|chr16 (30482541-30481930)
               

               
               19-615, gnl|Hg17|chr1 (8353137-8352526)
               

               
               19-615, gnl|Mm7|chr4 (149606406-149607017)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-619, gnl|bosTau2|chr5 (60335307-60334689)
               

               
               1-619, gnl|Hg17|chr12 (6917983-6918601)
               

               
               1-619, gnl|Mm7|chr6 (124770567-124769949)
               


               
               19-615, gnl|bosTau2|chr16 (30482541-30481930)
               

               
               19-615, gnl|Hg17|chr1 (8353137-8352526)
               

               
               19-615, gnl|Mm7|chr4 (149606406-149607017)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               ebs (0.118301)

	200-399, - strand, RNAz p=0.995721
	234-353, - strand, RNAz p=0.706666
	480-619, - strand, RNAz p=0.875366

	508-613, - strand, RNAmicro p=0.982622
	239-404, - strand, RNAmicro p=0.929811

	200-395, BY795192 Homo sapiens eye Homo sapiens cDNA clone HE0251.seq 5', (dbj\|BY795192.2\|), blast E-value=0, identity=92.35%
	200-395, CR997517 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016O0410 5', (emb\|CR997517.1\|), blast E-value=0, identity=92.35%
	200-395, 17000424723607 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN409254.1\|), blast E-value=0, identity=92.35%
	200-395, 17000599937487 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence (gb\|CN409270.1\|), blast E-value=0, identity=92.35%
	200-399, LB0161.CR_D17 GC_BGC-16 Bos taurus cDNA clone IMAGE (gb\|DT808631.1\|), blast E-value=0, identity=95%
	200-399, LB0291.CR_I14 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|DV916308.1\|), blast E-value=0, identity=93.5%

	1-619, gnl\|bosTau2\|chr5 (60335307-60334689)
	1-619, gnl\|Hg17\|chr12 (6917983-6918601)
	1-619, gnl\|Mm7\|chr6 (124770567-124769949)

	19-615, gnl\|bosTau2\|chr16 (30482541-30481930)
	19-615, gnl\|Hg17\|chr1 (8353137-8352526)
	19-615, gnl\|Mm7\|chr4 (149606406-149607017)