Ss1.1-Mixg-0006d11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGGACGGCAGGTGGGGGGTGACGCCCACGTGTCCCGCGTCTCCATGTGGGAGCCACA GGTGTTCACGGTTTGATCCCGATGGTAGCGGCCGGCCGGCCACCTGGGATAATTTCGGCT TCTGGGATAACCGCATAGACGAGCCAATTTTGCTGCCGCCCAGCATCAAGTACGGCAAGC CGATTCCCAAAGTCAGCTTGGCGAACGTGGGCGGCGCCTCGCAGATCGGCAAACGCAAAG AGAACGAAGACCGCTTTGACTTCGCTCAGCTCACGGACCAGATCCTGTACTTTGCGGTGT ATGACGGCCACGGCGGGCCCGCCGCTGCCGATTTCTGCCACACCCACATGGAGCAGTGCA TCCTGGATTTGCTTCCTAAGGAGCAGGACTTGGAGACTGTGTTGACCTTGGCTTTTCTAG AAATAGATAAAGCCTTTGCAAGGCACGCCCACCTCTCTGCTGATGCAACCCTTCTGACTT CTGGGACTACTGCAACAGTAGCCCTGTTGAGAGATGGCATTGAACTGGTTGTAGCCAGTG TTGGGGACAGCCGAGCTATTTTGTGTAGAAAAGGAAAACCCATGAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGGACGGCAGGTGGGGGGTGACGCCCACGTGTCCCGCGTCTCCATGTGGGAGCCACA GGTGTTCACGGTTTGATCCCGATGGTAGCGGCCGGCCGGCCACCTGGGATAATTTCGGCT TCTGGGATAACCGCATAGACGAGCCAATTTTGCTGCCGCCCAGCATCAAGTACGGCAAGC CGATTCCCAAAGTCAGCTTGGCGAACGTGGGCGGCGCCTCGCAGATCGGCAAACGCAAAG AGAACGAAGACCGCTTTGACTTCGCTCAGCTCACGGACCAGATCCTGTACTTTGCGGTGT ATGACGGCCACGGCGGGCCCGCCGCTGCCGATTTCTGCCACACCCACATGGAGCAGTGCA TCCTGGATTTGCTTCCTAAGGAGCAGGACTTGGAGACTGTGTTGACCTTGGCTTTTCTAG AAATAGATAAAGCCTTTGCAAGGCACGCCCACCTCTCTGCTGATGCAACCCTTCTGACTT CTGGGACTACTGCAACAGTAGCCCTGTTGAGAGATGGCATTGAACTGGTTGTAGCCAGTG TTGGGGACAGCCGAGCTATTTTGTGTAGAAAAGGAAAACCCATGAAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 80-199, - strand, RNAz p=0.628832 | |
| 465-588, + strand, RNAz p=0.779191 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-199, - strand, RNAz p=0.628832 | |
| 465-588, + strand, RNAz p=0.779191 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AF351614, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-365, gnl|bosTau2|chr6 (16459232-16459590) | |
| 1-365, gnl|canFam2|chr32 (14576509-14576836) | |
| 1-365, gnl|danRer3|chr10 (24058817-24059142) | |
| 1-365, gnl|dasNov1|scaffold_15523 (15871-16198) | |
| 1-365, gnl|echTel1|scaffold_263915 (3523-3851) | |
| 1-365, gnl|fr1|chrUn (214068966-214068662) | |
| 1-365, gnl|galGal2|chr4 (47585092-47585416) | |
| 1-365, gnl|hg17|chr4 (89556467-89556794) | |
| 1-365, gnl|Hg17|chr4 (89556832-89556474) | |
| 1-365, gnl|loxAfr1|scaffold_55789 (7330-7003) | |
| 1-365, gnl|mm7|chr6 (57488100-57488426) | |
| 1-365, gnl|Mm7|chr6 (57488464-57488106) | |
| 1-365, gnl|monDom2|scaffold_32 (21431472-21431799) | |
| 1-365, gnl|oryCun1|scaffold_178844 (47685-48012) | |
| 1-365, gnl|panTro1|chr3 (105553097-105553424) | |
| 1-365, gnl|rheMac2|chr5 (81239015-81239342) | |
| 1-365, gnl|rn3|chr4 (87620049-87619723) | |
| 1-365, gnl|tetNig1|chr18 (6538534-6538832) | |
| 1-365, gnl|xenTro1|scaffold_424 (500191-499858) | |
| 465-588, gnl|bosTau2|chr6 (16467852-16467975) | |
| 465-588, gnl|canFam2|chr32 (14568205-14568405) | |
| 465-588, gnl|danRer3|chr10 (24049404-24049602) | |
| 465-588, gnl|dasNov1|scaffold_15523 (8072-8272) | |
| 465-588, gnl|echTel1|scaffold_97849 (10973-11173) | |
| 465-588, gnl|galGal2|chr4 (47577041-47577232) | |
| 465-588, gnl|hg17|chr4 (89547060-89547262) | |
| 465-588, gnl|Hg17|chr4 (89547238-89547115) | |
| 465-588, gnl|mm7|chr6 (57478951-57479151) | |
| 465-588, gnl|Mm7|chr6 (57479129-57479006) | |
| 465-588, gnl|monDom2|scaffold_32 (21423410-21423607) | |
| 465-588, gnl|oryCun1|scaffold_192440 (3261-3461) | |
| 465-588, gnl|panTro1|chr3 (105543686-105543888) | |
| 465-588, gnl|rheMac2|chr5 (81229524-81229726) | |
| 465-588, gnl|rn3|chr4 (87628537-87628339) | |
| 465-588, gnl|tetNig1|chr18 (6536047-6536223) | |
| 465-588, gnl|xenTro1|scaffold_424 (507039-506838) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-365, gnl|bosTau2|chr6 (16459232-16459590) | |
| 1-365, gnl|canFam2|chr32 (14576509-14576836) | |
| 1-365, gnl|danRer3|chr10 (24058817-24059142) | |
| 1-365, gnl|dasNov1|scaffold_15523 (15871-16198) | |
| 1-365, gnl|echTel1|scaffold_263915 (3523-3851) | |
| 1-365, gnl|fr1|chrUn (214068966-214068662) | |
| 1-365, gnl|galGal2|chr4 (47585092-47585416) | |
| 1-365, gnl|hg17|chr4 (89556467-89556794) | |
| 1-365, gnl|Hg17|chr4 (89556832-89556474) | |
| 1-365, gnl|loxAfr1|scaffold_55789 (7330-7003) | |
| 1-365, gnl|mm7|chr6 (57488100-57488426) | |
| 1-365, gnl|Mm7|chr6 (57488464-57488106) | |
| 1-365, gnl|monDom2|scaffold_32 (21431472-21431799) | |
| 1-365, gnl|oryCun1|scaffold_178844 (47685-48012) | |
| 1-365, gnl|panTro1|chr3 (105553097-105553424) | |
| 1-365, gnl|rheMac2|chr5 (81239015-81239342) | |
| 1-365, gnl|rn3|chr4 (87620049-87619723) | |
| 1-365, gnl|tetNig1|chr18 (6538534-6538832) | |
| 1-365, gnl|xenTro1|scaffold_424 (500191-499858) | |
| 465-588, gnl|bosTau2|chr6 (16467852-16467975) | |
| 465-588, gnl|canFam2|chr32 (14568205-14568405) | |
| 465-588, gnl|danRer3|chr10 (24049404-24049602) | |
| 465-588, gnl|dasNov1|scaffold_15523 (8072-8272) | |
| 465-588, gnl|echTel1|scaffold_97849 (10973-11173) | |
| 465-588, gnl|galGal2|chr4 (47577041-47577232) | |
| 465-588, gnl|hg17|chr4 (89547060-89547262) | |
| 465-588, gnl|Hg17|chr4 (89547238-89547115) | |
| 465-588, gnl|mm7|chr6 (57478951-57479151) | |
| 465-588, gnl|Mm7|chr6 (57479129-57479006) | |
| 465-588, gnl|monDom2|scaffold_32 (21423410-21423607) | |
| 465-588, gnl|oryCun1|scaffold_192440 (3261-3461) | |
| 465-588, gnl|panTro1|chr3 (105543686-105543888) | |
| 465-588, gnl|rheMac2|chr5 (81229524-81229726) | |
| 465-588, gnl|rn3|chr4 (87628537-87628339) | |
| 465-588, gnl|tetNig1|chr18 (6536047-6536223) | |
| 465-588, gnl|xenTro1|scaffold_424 (507039-506838) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |