Ss1.1-Mixg-0006e07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGGAGACTTGCTCTTCTCCTGCCCGGCCTACGCCTACGTGCTCACGGTCAACGAGCGG GGCAACCACTGCGAGTTCTGCTTCGCCAGGAAAGAAGGATTGTCCAAATGTGGAAGATGC AAGCAGGCATTTTACTGCAATGTGGAGTGTCAGAAAGAAGATTGGCCCATGCACAAGCTG GAATGTTCTCCCATGGTTGTTTTCGGGGAAAACTGGAATCCCTCAGAGACTGTAAGGCTG ACGGCAAGAATTCTGGCCAAACAGAAAATCCACCCGGAGAGAACCCCTTCCGAGAAGTTG TTGGCCGTGAAGGAGTTTGAATCACATCTGGATAAGTTAGACAATGAGAAGAGGGACTTG ATTCAGAGTGACATTGCTGCTCTGCATCACTTTTACTCCAAGCACCTCGAATTCCCCGAC AGCGATAGCCTGGTGGTACTCTTTGCACAGGTGAACTGTAACGGCTTCACAATTGAAGAC GAGGAGCTTTCTCATTTGGGATCAGCAATATTTCCTGATGTTGCACTGATGAATCATAGT TGTTGTCCCAATGTCATTGTGACCTACAAGGGGACCCTGGCAGAAGTCAGAGCCGTACAG GAAATCCACCCTGGAGAGGAGGTTTTTACCAGTTACATTGACCTCCTGTACCCAACGGAA GATCGGAACGACCGACTGAGGGATTCCTATTTCTTTACCTGTGAGTGCCAGGAGTGCACC ACCAAAGACAAGGACAAGGCCAAGGTGGAAATCCGGAAGCTCAACGATCCCCCGAAAGCA GAAGCCATCCGCGACATGGTCAGATACGCGCGCAACGTCATCGAGGAGTTCCGGAGGGCC AAGCACTACAAGTCCCCTAGTGAGCTGCTGGAGATCTGCGAGCTCAGCCAGGAGAAGATG AGCTGCGTGTTTGAGGACAGTAACGTGTACATGCTGCACATGATGTACCAGGCCATGGGC GTCTGCTTGTACATGCAGGACTGGGAGGGAGCTCTGCGGTACGGACAGAAAATCATCCAG CCCTACAGTAAGCACTATCCGCTGTACTCCTTGAACGTGGCCTCCATGTGGCTGAAGCTA GGAAGGCTGTACATGGGCCTGGAGAACAAAGCTGCTGGGGAGAGAGCCCTGAGGAAGGCC ATCGCCATCATGGAAGTAGCTCATGGCAAAGACCATCCTTACATTTCTGAGATCAAACAG GAAATTGAAAGCCACTGAAACTCTGCTGACCTGTTAGCATTTATTTCAATACTAGCGCAG AAGACTTCGAGGATTTGACTATTTCAGATTGTACTCATCACGCCAGCATTTCTGTAAACT CATTGGAATGAAAACACAACTTGCACTTAAACCTTCTACATGGCTTACTTGGTCTTGGTC TTAATCTTTAATATCAAATTAACTTTTGAATGTGTTTTTTCCCCCTACGAGATAACGGCA CAGTTTCATATATGTTAGACAGATTGCATTTCAACATGCAGTTATTTTTCCTTTCATGCC TACTCTCATGTTCTGAACAAACCTAAATGATGACAGAATAAAAAAGATAAGAGTAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGGAGACTTGCTCTTCTCCTGCCCGGCCTACGCCTACGTGCTCACGGTCAACGAGCGG GGCAACCACTGCGAGTTCTGCTTCGCCAGGAAAGAAGGATTGTCCAAATGTGGAAGATGC AAGCAGGCATTTTACTGCAATGTGGAGTGTCAGAAAGAAGATTGGCCCATGCACAAGCTG GAATGTTCTCCCATGGTTGTTTTCGGGGAAAACTGGAATCCCTCAGAGACTGTAAGGCTG ACGGCAAGAATTCTGGCCAAACAGAAAATCCACCCGGAGAGAACCCCTTCCGAGAAGTTG TTGGCCGTGAAGGAGTTTGAATCACATCTGGATAAGTTAGACAATGAGAAGAGGGACTTG ATTCAGAGTGACATTGCTGCTCTGCATCACTTTTACTCCAAGCACCTCGAATTCCCCGAC AGCGATAGCCTGGTGGTACTCTTTGCACAGGTGAACTGTAACGGCTTCACAATTGAAGAC GAGGAGCTTTCTCATTTGGGATCAGCAATATTTCCTGATGTTGCACTGATGAATCATAGT TGTTGTCCCAATGTCATTGTGACCTACAAGGGGACCCTGGCAGAAGTCAGAGCCGTACAG GAAATCCACCCTGGAGAGGAGGTTTTTACCAGTTACATTGACCTCCTGTACCCAACGGAA GATCGGAACGACCGACTGAGGGATTCCTATTTCTTTACCTGTGAGTGCCAGGAGTGCACC ACCAAAGACAAGGACAAGGCCAAGGTGGAAATCCGGAAGCTCAACGATCCCCCGAAAGCA GAAGCCATCCGCGACATGGTCAGATACGCGCGCAACGTCATCGAGGAGTTCCGGAGGGCC AAGCACTACAAGTCCCCTAGTGAGCTGCTGGAGATCTGCGAGCTCAGCCAGGAGAAGATG AGCTGCGTGTTTGAGGACAGTAACGTGTACATGCTGCACATGATGTACCAGGCCATGGGC GTCTGCTTGTACATGCAGGACTGGGAGGGAGCTCTGCGGTACGGACAGAAAATCATCCAG CCCTACAGTAAGCACTATCCGCTGTACTCCTTGAACGTGGCCTCCATGTGGCTGAAGCTA GGAAGGCTGTACATGGGCCTGGAGAACAAAGCTGCTGGGGAGAGAGCCCTGAGGAAGGCC ATCGCCATCATGGAAGTAGCTCATGGCAAAGACCATCCTTACATTTCTGAGATCAAACAG GAAATTGAAAGCCACTGAAACTCTGCTGACCTGTTAGCATTTATTTCAATACTAGCGCAG AAGACTTCGAGGATTTGACTATTTCAGATTGTACTCATCACGCCAGCATTTCTGTAAACT CATTGGAATGAAAACACAACTTGCACTTAAACCTTCTACATGGCTTACTTGGTCTTGGTC TTAATCTTTAATATCAAATTAACTTTTGAATGTGTTTTTTCCCCCTACGAGATAACGGCA CAGTTTCATATATGTTAGACAGATTGCATTTCAACATGCAGTTATTTTTCCTTTCATGCC TACTCTCATGTTCTGAACAAACCTAAATGATGACAGAATAAAAAAGATAAGAGTAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 911-1028, + strand, RNAz p=0.868119 | |
| 936-1028, - strand, RNAz p=0.637452 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 911-1028, + strand, RNAz p=0.868119 | |
| 936-1028, - strand, RNAz p=0.637452 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC094747, + |
| Aligned organism(s): 94 entry(ies) | More info |
| Aligned organism(s): 94 entry(ies) | Help | Less info |
| 151-264, gnl|bosTau2|chr16 (49932357-49932470) | |
| 151-264, gnl|canFam2|chr7 (15270672-15270810) | |
| 151-264, gnl|danRer3|chr20 (250774-250653) | |
| 151-264, gnl|dasNov1|scaffold_1649 (20061-20199) | |
| 151-264, gnl|echTel1|scaffold_317850 (52805-52943) | |
| 151-264, gnl|fr1|chrUn (232528084-232527958) | |
| 151-264, gnl|galGal2|chr3 (17529088-17528954) | |
| 151-264, gnl|hg17|chr1 (210876488-210876626) | |
| 151-264, gnl|Hg17|chr1 (210876497-210876610) | |
| 151-264, gnl|loxAfr1|scaffold_47627 (13520-13382) | |
| 151-264, gnl|mm7|chr1 (189432258-189432116) | |
| 151-264, gnl|Mm7|chr1 (189432243-189432130) | |
| 151-264, gnl|monDom2|scaffold_13 (18870393-18870529) | |
| 151-264, gnl|oryCun1|scaffold_191072 (129736-129872) | |
| 151-264, gnl|panTro1|chr1 (194587337-194587475) | |
| 151-264, gnl|rheMac2|chr1 (156137811-156137673) | |
| 151-264, gnl|rn3|chr13 (106370041-106369897) | |
| 151-264, gnl|tetNig1|chr14 (4981452-4981326) | |
| 151-264, gnl|xenTro1|scaffold_68 (471863-471735) | |
| 323-452, gnl|bosTau2|chr16 (49935864-49935993) | |
| 323-452, gnl|canFam2|chr7 (15274390-15274505) | |
| 323-452, gnl|danRer3|chr20 (248135-248026) | |
| 323-452, gnl|dasNov1|scaffold_155747 (3114-2995) | |
| 323-452, gnl|echTel1|scaffold_317850 (56087-56207) | |
| 323-452, gnl|fr1|chrUn (232526924-232526823) | |
| 323-452, gnl|galGal2|chr3 (17524879-17524764) | |
| 323-452, gnl|hg17|chr1 (210880578-210880693) | |
| 323-452, gnl|Hg17|chr1 (210880594-210880723) | |
| 323-452, gnl|loxAfr1|scaffold_47627 (9620-9500) | |
| 323-452, gnl|mm7|chr1 (189429027-189428913) | |
| 323-452, gnl|Mm7|chr1 (189429010-189428881) | |
| 323-452, gnl|monDom2|scaffold_13 (18877160-18877275) | |
| 323-452, gnl|oryCun1|scaffold_191072 (133300-133415) | |
| 323-452, gnl|panTro1|chr1 (194591427-194591542) | |
| 323-452, gnl|rheMac2|chr1 (156134155-156134040) | |
| 323-452, gnl|rn3|chr13 (106366814-106366700) | |
| 323-452, gnl|tetNig1|chr14 (4981128-4981020) | |
| 323-452, gnl|xenTro1|scaffold_68 (468082-467977) | |
| 519-623, gnl|bosTau2|chr16 (49944324-49944428) | |
| 519-623, gnl|canFam2|chr7 (15280897-15281024) | |
| 519-623, gnl|danRer3|chr20 (245238-245104) | |
| 519-623, gnl|dasNov1|scaffold_1649 (40624-40751) | |
| 519-623, gnl|echTel1|scaffold_317850 (65278-65405) | |
| 519-623, gnl|fr1|chrUn (53125502-53125638) | |
| 519-623, gnl|galGal2|chr3 (17520085-17519957) | |
| 519-623, gnl|hg17|chr1 (210889340-210889467) | |
| 519-623, gnl|Hg17|chr1 (210889360-210889464) | |
| 519-623, gnl|mm7|chr1 (189421251-189421124) | |
| 519-623, gnl|Mm7|chr1 (189421229-189421125) | |
| 519-623, gnl|monDom2|scaffold_13 (18889268-18889399) | |
| 519-623, gnl|oryCun1|scaffold_191072 (139378-139505) | |
| 519-623, gnl|panTro1|chr1 (194600196-194600323) | |
| 519-623, gnl|rheMac2|chr1 (156125411-156125284) | |
| 519-623, gnl|rn3|chr13 (106356865-106356738) | |
| 519-623, gnl|tetNig1|chr14 (4980604-4980495) | |
| 519-623, gnl|xenTro1|scaffold_68 (467260-467138) | |
| 731-851, gnl|bosTau2|chr16 (49948057-49948177) | |
| 731-851, gnl|canFam2|chr7 (15284571-15284711) | |
| 731-851, gnl|danRer3|chr20 (241826-241682) | |
| 731-851, gnl|dasNov1|scaffold_1649 (44012-44152) | |
| 731-851, gnl|echTel1|scaffold_317850 (69004-69144) | |
| 731-851, gnl|fr1|chrUn (53126645-53126786) | |
| 731-851, gnl|galGal2|chr3 (17515857-17515717) | |
| 731-851, gnl|hg17|chr1 (210892678-210892818) | |
| 731-851, gnl|Hg17|chr1 (210892686-210892806) | |
| 731-851, gnl|mm7|chr1 (189417742-189417603) | |
| 731-851, gnl|Mm7|chr1 (189417733-189417613) | |
| 731-851, gnl|monDom2|scaffold_13 (18894719-18894863) | |
| 731-851, gnl|panTro1|chr1 (194603530-194603670) | |
| 731-851, gnl|rheMac2|chr1 (156122051-156121911) | |
| 731-851, gnl|rn3|chr13 (106353957-106353817) | |
| 731-851, gnl|tetNig1|chr14 (4980211-4980075) | |
| 854-1028, gnl|bosTau2|chr16 (49949139-49949313) | |
| 854-1028, gnl|canFam2|chr7 (15285669-15285887) | |
| 854-1028, gnl|danRer3|chr20 (240940-240746) | |
| 854-1028, gnl|dasNov1|scaffold_1649 (45076-45294) | |
| 854-1028, gnl|echTel1|scaffold_317850 (70590-70807) | |
| 854-1028, gnl|fr1|chrUn (53126859-53127053) | |
| 854-1028, gnl|galGal2|chr3 (17514983-17514771) | |
| 854-1028, gnl|hg17|chr1 (210893733-210893951) | |
| 854-1028, gnl|Hg17|chr1 (210893756-210893930) | |
| 854-1028, gnl|loxAfr1|scaffold_121726 (3902-4119) | |
| 854-1028, gnl|mm7|chr1 (189416336-189416125) | |
| 854-1028, gnl|Mm7|chr1 (189416310-189416136) | |
| 854-1028, gnl|monDom2|scaffold_13 (18896589-18896822) | |
| 854-1028, gnl|oryCun1|scaffold_191072 (143059-143277) | |
| 854-1028, gnl|panTro1|chr1 (194604585-194604803) | |
| 854-1028, gnl|rheMac2|chr1 (156121011-156120793) | |
| 854-1028, gnl|rn3|chr13 (106352595-106352384) | |
| 854-1028, gnl|tetNig1|chr14 (4980013-4979819) | |
| 854-1028, gnl|xenTro1|scaffold_68 (462060-461844) | |
| 1136-1555, gnl|bosTau2|chr16 (49954431-49954869) | |
| 1136-1555, gnl|Hg17|chr1 (210898440-210898869) | |
| 1136-1555, gnl|Mm7|chr1 (189413180-189412809) |
| Aligned organism(s): 94 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 151-264, gnl|bosTau2|chr16 (49932357-49932470) | |
| 151-264, gnl|canFam2|chr7 (15270672-15270810) | |
| 151-264, gnl|danRer3|chr20 (250774-250653) | |
| 151-264, gnl|dasNov1|scaffold_1649 (20061-20199) | |
| 151-264, gnl|echTel1|scaffold_317850 (52805-52943) | |
| 151-264, gnl|fr1|chrUn (232528084-232527958) | |
| 151-264, gnl|galGal2|chr3 (17529088-17528954) | |
| 151-264, gnl|hg17|chr1 (210876488-210876626) | |
| 151-264, gnl|Hg17|chr1 (210876497-210876610) | |
| 151-264, gnl|loxAfr1|scaffold_47627 (13520-13382) | |
| 151-264, gnl|mm7|chr1 (189432258-189432116) | |
| 151-264, gnl|Mm7|chr1 (189432243-189432130) | |
| 151-264, gnl|monDom2|scaffold_13 (18870393-18870529) | |
| 151-264, gnl|oryCun1|scaffold_191072 (129736-129872) | |
| 151-264, gnl|panTro1|chr1 (194587337-194587475) | |
| 151-264, gnl|rheMac2|chr1 (156137811-156137673) | |
| 151-264, gnl|rn3|chr13 (106370041-106369897) | |
| 151-264, gnl|tetNig1|chr14 (4981452-4981326) | |
| 151-264, gnl|xenTro1|scaffold_68 (471863-471735) | |
| 323-452, gnl|bosTau2|chr16 (49935864-49935993) | |
| 323-452, gnl|canFam2|chr7 (15274390-15274505) | |
| 323-452, gnl|danRer3|chr20 (248135-248026) | |
| 323-452, gnl|dasNov1|scaffold_155747 (3114-2995) | |
| 323-452, gnl|echTel1|scaffold_317850 (56087-56207) | |
| 323-452, gnl|fr1|chrUn (232526924-232526823) | |
| 323-452, gnl|galGal2|chr3 (17524879-17524764) | |
| 323-452, gnl|hg17|chr1 (210880578-210880693) | |
| 323-452, gnl|Hg17|chr1 (210880594-210880723) | |
| 323-452, gnl|loxAfr1|scaffold_47627 (9620-9500) | |
| 323-452, gnl|mm7|chr1 (189429027-189428913) | |
| 323-452, gnl|Mm7|chr1 (189429010-189428881) | |
| 323-452, gnl|monDom2|scaffold_13 (18877160-18877275) | |
| 323-452, gnl|oryCun1|scaffold_191072 (133300-133415) | |
| 323-452, gnl|panTro1|chr1 (194591427-194591542) | |
| 323-452, gnl|rheMac2|chr1 (156134155-156134040) | |
| 323-452, gnl|rn3|chr13 (106366814-106366700) | |
| 323-452, gnl|tetNig1|chr14 (4981128-4981020) | |
| 323-452, gnl|xenTro1|scaffold_68 (468082-467977) | |
| 519-623, gnl|bosTau2|chr16 (49944324-49944428) | |
| 519-623, gnl|canFam2|chr7 (15280897-15281024) | |
| 519-623, gnl|danRer3|chr20 (245238-245104) | |
| 519-623, gnl|dasNov1|scaffold_1649 (40624-40751) | |
| 519-623, gnl|echTel1|scaffold_317850 (65278-65405) | |
| 519-623, gnl|fr1|chrUn (53125502-53125638) | |
| 519-623, gnl|galGal2|chr3 (17520085-17519957) | |
| 519-623, gnl|hg17|chr1 (210889340-210889467) | |
| 519-623, gnl|Hg17|chr1 (210889360-210889464) | |
| 519-623, gnl|mm7|chr1 (189421251-189421124) | |
| 519-623, gnl|Mm7|chr1 (189421229-189421125) | |
| 519-623, gnl|monDom2|scaffold_13 (18889268-18889399) | |
| 519-623, gnl|oryCun1|scaffold_191072 (139378-139505) | |
| 519-623, gnl|panTro1|chr1 (194600196-194600323) | |
| 519-623, gnl|rheMac2|chr1 (156125411-156125284) | |
| 519-623, gnl|rn3|chr13 (106356865-106356738) | |
| 519-623, gnl|tetNig1|chr14 (4980604-4980495) | |
| 519-623, gnl|xenTro1|scaffold_68 (467260-467138) | |
| 731-851, gnl|bosTau2|chr16 (49948057-49948177) | |
| 731-851, gnl|canFam2|chr7 (15284571-15284711) | |
| 731-851, gnl|danRer3|chr20 (241826-241682) | |
| 731-851, gnl|dasNov1|scaffold_1649 (44012-44152) | |
| 731-851, gnl|echTel1|scaffold_317850 (69004-69144) | |
| 731-851, gnl|fr1|chrUn (53126645-53126786) | |
| 731-851, gnl|galGal2|chr3 (17515857-17515717) | |
| 731-851, gnl|hg17|chr1 (210892678-210892818) | |
| 731-851, gnl|Hg17|chr1 (210892686-210892806) | |
| 731-851, gnl|mm7|chr1 (189417742-189417603) | |
| 731-851, gnl|Mm7|chr1 (189417733-189417613) | |
| 731-851, gnl|monDom2|scaffold_13 (18894719-18894863) | |
| 731-851, gnl|panTro1|chr1 (194603530-194603670) | |
| 731-851, gnl|rheMac2|chr1 (156122051-156121911) | |
| 731-851, gnl|rn3|chr13 (106353957-106353817) | |
| 731-851, gnl|tetNig1|chr14 (4980211-4980075) | |
| 854-1028, gnl|bosTau2|chr16 (49949139-49949313) | |
| 854-1028, gnl|canFam2|chr7 (15285669-15285887) | |
| 854-1028, gnl|danRer3|chr20 (240940-240746) | |
| 854-1028, gnl|dasNov1|scaffold_1649 (45076-45294) | |
| 854-1028, gnl|echTel1|scaffold_317850 (70590-70807) | |
| 854-1028, gnl|fr1|chrUn (53126859-53127053) | |
| 854-1028, gnl|galGal2|chr3 (17514983-17514771) | |
| 854-1028, gnl|hg17|chr1 (210893733-210893951) | |
| 854-1028, gnl|Hg17|chr1 (210893756-210893930) | |
| 854-1028, gnl|loxAfr1|scaffold_121726 (3902-4119) | |
| 854-1028, gnl|mm7|chr1 (189416336-189416125) | |
| 854-1028, gnl|Mm7|chr1 (189416310-189416136) | |
| 854-1028, gnl|monDom2|scaffold_13 (18896589-18896822) | |
| 854-1028, gnl|oryCun1|scaffold_191072 (143059-143277) | |
| 854-1028, gnl|panTro1|chr1 (194604585-194604803) | |
| 854-1028, gnl|rheMac2|chr1 (156121011-156120793) | |
| 854-1028, gnl|rn3|chr13 (106352595-106352384) | |
| 854-1028, gnl|tetNig1|chr14 (4980013-4979819) | |
| 854-1028, gnl|xenTro1|scaffold_68 (462060-461844) | |
| 1136-1555, gnl|bosTau2|chr16 (49954431-49954869) | |
| 1136-1555, gnl|Hg17|chr1 (210898440-210898869) | |
| 1136-1555, gnl|Mm7|chr1 (189413180-189412809) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| bfe (0.449573) | |
| hea (0.408998) | |
| rec (0.346141) | |
| isp (0.300752) | |
| hlv (0.278513) | |
| cov (0.264306) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| eye (0.170503) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cst (0.140036) | |
| che (0.136314) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| cly (0.120642) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (0.449573) | |
| hea (0.408998) | |
| rec (0.346141) | |
| isp (0.300752) | |
| hlv (0.278513) | |
| cov (0.264306) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| eye (0.170503) | |
| cje (0.165235) | |
| csp (0.161186) | |
| cst (0.140036) | |
| che (0.136314) | |
| lyg (0.133103) | |
| ese (0.126502) | |
| cly (0.120642) |