Non-Coding RNA Search

Ss1.1-Mixg-0006h05.3

Sequence:


               
               GGAGCTCCTGAAGGCTGCATTCCTCCTGGTTTACCACGACTGTGCACTCCCGCTTCTTCA
CTCCACGCTCCTGCCCCAGCTCCGGTGGGCAGAGGAGGAGAGTGAGGCTGCCCGCTGGAA
GGTCATCACCGACTTCCTTAAGCAGAACCAAGAAAACGACGGCGCCCTCCAAGCTCTGCT
GTCACCAGAGGGAGTCCATGAGCCTTTTGACATTTCGGAGCAGACCTATGACTTCTTGGG
TGAAATAAGAAAGAACACAGCCTGACAGTGGTGGCCCTTGACCCTCAGCGCCCGCCCTGA
GTCTGACAGACCCTCCACAAAGACCCGAATAAATGACAGAACCGCAAGTAACTGTCACAT
TATAACTTAGGCTTTATGCGTCTTTGTACATGCCACATTCTATAAGAAATATTTATCTGA
TAATTCGAATTCGTGTTAATACAATAAAATAAAATTTTAGAAGGAATACTGTCACATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCTCCTGAAGGCTGCATTCCTCCTGGTTTACCACGACTGTGCACTCCCGCTTCTTCA
CTCCACGCTCCTGCCCCAGCTCCGGTGGGCAGAGGAGGAGAGTGAGGCTGCCCGCTGGAA
GGTCATCACCGACTTCCTTAAGCAGAACCAAGAAAACGACGGCGCCCTCCAAGCTCTGCT
GTCACCAGAGGGAGTCCATGAGCCTTTTGACATTTCGGAGCAGACCTATGACTTCTTGGG
TGAAATAAGAAAGAACACAGCCTGACAGTGGTGGCCCTTGACCCTCAGCGCCCGCCCTGA
GTCTGACAGACCCTCCACAAAGACCCGAATAAATGACAGAACCGCAAGTAACTGTCACAT
TATAACTTAGGCTTTATGCGTCTTTGTACATGCCACATTCTATAAGAAATATTTATCTGA
TAATTCGAATTCGTGTTAATACAATAAAATAAAATTTTAGAAGGAATACTGTCACATCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61887917|ref|XP_592095.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887917|ref|XP_592095.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, - strand, RNAz p=0.56544

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.56544

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-300, gnl|bosTau2|chr11 (2483719-2484017)
               

               
               1-300, gnl|Hg17|chr2 (110239007-110238709)
               

               
               1-300, gnl|Mm7|chr2 (127482033-127481721)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-300, gnl|bosTau2|chr11 (2483719-2484017)
               

               
               1-300, gnl|Hg17|chr2 (110239007-110238709)
               

               
               1-300, gnl|Mm7|chr2 (127482033-127481721)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               hyp (0.142837)

	1-300, gnl\|bosTau2\|chr11 (2483719-2484017)
	1-300, gnl\|Hg17\|chr2 (110239007-110238709)
	1-300, gnl\|Mm7\|chr2 (127482033-127481721)