Ss1.1-Mixg-0007a07.5
|
GCCGGCTTCCGGTCAAGTGGATGGCTCCAGAGGCCCTTTTTGATCGCGTGTACACCCACC
AGAGTGATGTCTGGTCCTTCGGGGTGTTAATGTGGGAGATCTTCACGTTAGGGGGCTCGC
CCTACCCAGGGATTCCCGTGGAGGAACTTTTTAAGCTGCTCAAAGAAGGACACAGGATGG
ATAAGCCAGCAAACTGCACCAACGAACTGTATATGATGATGAGAGACTGTTGGCATGCGG
TGCCCTCACAGAGACCCACCTTCAAGCAGTTGGTAGAAGACTTGGATCGAATTCTCACAC
TCACGACCAATGAGGACTACTTGGACCTCAGTCAGCCTCTCGAACAGTATTCACCTAGTT
ACCCTGACACCAGGAGTTCTTGCTCTTCGGGAGATGATTCTGTTTTCTCTCCGGACCCCA
TGCCTTATGAACCCTGCCTTCCTCCGTACCCACAGAGAAACGGCAGTGTTAACACATGAA
CGGGCTTGTCCCCCTGTCCCCAGACAGGGCCGCGCCGGGAGCCTAGGTGTACTGAGCAGG
GGAGGCCATGCCTCCCGCAGCCTGTATATATGGATCAGAGGAGTAAATAATTGGAAACGT
GATCGGCACACGTGTAAAGAATTTAACCTGTTGGCAACTTGTCATCTTCACCAGGGGAAG
AAGAATGTTTCTGGGGCAGTGGACGGCCACGGGCCCCTCCGTGCCGTGCCCGTGACCCAC
TGTGCTGGCTGTGGACCAGCCGGACTCAAGGCCGACATAGGTTCGGCCTTCCTTGTGAAT
TTTGTAATAATTGGAGAAAATATATGTCAGCACACACTTACAGAGCACAATTGCAGTATA
TAGGTGCTGGATGTATGTAAATATATTCAAATTATGTATAAATATATATTATATATTTAC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCGGCTTCCGGTCAAGTGGATGGCTCCAGAGGCCCTTTTTGATCGCGTGTACACCCACC
AGAGTGATGTCTGGTCCTTCGGGGTGTTAATGTGGGAGATCTTCACGTTAGGGGGCTCGC
CCTACCCAGGGATTCCCGTGGAGGAACTTTTTAAGCTGCTCAAAGAAGGACACAGGATGG
ATAAGCCAGCAAACTGCACCAACGAACTGTATATGATGATGAGAGACTGTTGGCATGCGG
TGCCCTCACAGAGACCCACCTTCAAGCAGTTGGTAGAAGACTTGGATCGAATTCTCACAC
TCACGACCAATGAGGACTACTTGGACCTCAGTCAGCCTCTCGAACAGTATTCACCTAGTT
ACCCTGACACCAGGAGTTCTTGCTCTTCGGGAGATGATTCTGTTTTCTCTCCGGACCCCA
TGCCTTATGAACCCTGCCTTCCTCCGTACCCACAGAGAAACGGCAGTGTTAACACATGAA
CGGGCTTGTCCCCCTGTCCCCAGACAGGGCCGCGCCGGGAGCCTAGGTGTACTGAGCAGG
GGAGGCCATGCCTCCCGCAGCCTGTATATATGGATCAGAGGAGTAAATAATTGGAAACGT
GATCGGCACACGTGTAAAGAATTTAACCTGTTGGCAACTTGTCATCTTCACCAGGGGAAG
AAGAATGTTTCTGGGGCAGTGGACGGCCACGGGCCCCTCCGTGCCGTGCCCGTGACCCAC
TGTGCTGGCTGTGGACCAGCCGGACTCAAGGCCGACATAGGTTCGGCCTTCCTTGTGAAT
TTTGTAATAATTGGAGAAAATATATGTCAGCACACACTTACAGAGCACAATTGCAGTATA
TAGGTGCTGGATGTATGTAAATATATTCAAATTATGTATAAATATATATTATATATTTAC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
802-903, + strand, RNAmicro p=0.940129 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
802-903, + strand, RNAmicro p=0.940129 |
|
782-850, C83670 rabbit corneal endothelial cell Oryctolagus cuniculus cDNA
(dbj|C83670.1|), blast E-value=2e-27, identity=98.55% |
|
782-850, 268923 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF603415.1|),
blast E-value=9e-30, identity=100% |
|
782-850, CT020017A10F01 Equine Articular Cartilage cDNA Library Equus
(gb|CX597150.1|), blast E-value=9e-30, identity=100% |
|
782-850, CT02033B2A09 Equine Articular Cartilage cDNA Library Equus caballus
(gb|CX602794.1|), blast E-value=9e-30, identity=100% |
|
782-850, DR010027B10G04 Canine normalized retinal cDNA library Canis
(gb|DT542200.1|), blast E-value=6e-28, identity=98.55% |
|
782-850, nba10g04.y1 Guinea pig eye minus retina and lens. Unnormalized
(gb|EB366839.1|), blast E-value=2e-27, identity=98.55% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
782-850, C83670 rabbit corneal endothelial cell Oryctolagus cuniculus cDNA
(dbj|C83670.1|), blast E-value=2e-27, identity=98.55% |
|
782-850, 268923 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF603415.1|),
blast E-value=9e-30, identity=100% |
|
782-850, CT020017A10F01 Equine Articular Cartilage cDNA Library Equus
(gb|CX597150.1|), blast E-value=9e-30, identity=100% |
|
782-850, CT02033B2A09 Equine Articular Cartilage cDNA Library Equus caballus
(gb|CX602794.1|), blast E-value=9e-30, identity=100% |
|
782-850, DR010027B10G04 Canine normalized retinal cDNA library Canis
(gb|DT542200.1|), blast E-value=6e-28, identity=98.55% |
|
782-850, nba10g04.y1 Guinea pig eye minus retina and lens. Unnormalized
(gb|EB366839.1|), blast E-value=2e-27, identity=98.55% |
|
71-211, gnl|bosTau2|chr26 (28952240-28952380) |
|
71-211, gnl|canFam2|chr28 (34310170-34310327) |
|
71-211, gnl|danRer3|chrUn (61998856-61999005) |
|
71-211, gnl|dasNov1|scaffold_1994 (16035-15889) |
|
71-211, gnl|echTel1|scaffold_260345 (522-628) |
|
71-211, gnl|fr1|chrUn (60553921-60553775) |
|
71-211, gnl|galGal2|chr6 (29907385-29907539) |
|
71-211, gnl|hg17|chr10 (123234884-123235041) |
|
71-211, gnl|Hg17|chr10 (123235036-123234896) |
|
71-211, gnl|loxAfr1|scaffold_1219 (113753-113598) |
|
71-211, gnl|mm7|chr7 (126284804-126284961) |
|
71-211, gnl|Mm7|chr7 (126284956-126284816) |
|
71-211, gnl|monDom2|scaffold_14 (38047697-38047540) |
|
71-211, gnl|oryCun1|scaffold_214766 (197565-197411) |
|
71-211, gnl|panTro1|chr8 (125560013-125560170) |
|
71-211, gnl|rheMac2|chr9 (121106149-121106306) |
|
71-211, gnl|rn3|chr1 (189640196-189640353) |
|
71-211, gnl|tetNig1|chr17 (1349434-1349594) |
|
71-211, gnl|xenTro1|scaffold_677 (490502-490353) |
| |
|
313-900, gnl|bosTau2|chr26 (28957168-28957767) |
|
313-900, gnl|Hg17|chr10 (123229527-123228927) |
|
313-900, gnl|Mm7|chr7 (126279205-126278602) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
71-211, gnl|bosTau2|chr26 (28952240-28952380) |
|
71-211, gnl|canFam2|chr28 (34310170-34310327) |
|
71-211, gnl|danRer3|chrUn (61998856-61999005) |
|
71-211, gnl|dasNov1|scaffold_1994 (16035-15889) |
|
71-211, gnl|echTel1|scaffold_260345 (522-628) |
|
71-211, gnl|fr1|chrUn (60553921-60553775) |
|
71-211, gnl|galGal2|chr6 (29907385-29907539) |
|
71-211, gnl|hg17|chr10 (123234884-123235041) |
|
71-211, gnl|Hg17|chr10 (123235036-123234896) |
|
71-211, gnl|loxAfr1|scaffold_1219 (113753-113598) |
|
71-211, gnl|mm7|chr7 (126284804-126284961) |
|
71-211, gnl|Mm7|chr7 (126284956-126284816) |
|
71-211, gnl|monDom2|scaffold_14 (38047697-38047540) |
|
71-211, gnl|oryCun1|scaffold_214766 (197565-197411) |
|
71-211, gnl|panTro1|chr8 (125560013-125560170) |
|
71-211, gnl|rheMac2|chr9 (121106149-121106306) |
|
71-211, gnl|rn3|chr1 (189640196-189640353) |
|
71-211, gnl|tetNig1|chr17 (1349434-1349594) |
|
71-211, gnl|xenTro1|scaffold_677 (490502-490353) |
| |
|
313-900, gnl|bosTau2|chr26 (28957168-28957767) |
|
313-900, gnl|Hg17|chr10 (123229527-123228927) |
|
313-900, gnl|Mm7|chr7 (126279205-126278602) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
spl (0.143184) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
spl (0.143184) |
