Non-Coding RNA Search

Ss1.1-Mixg-0007b04.3

Sequence:


               
               CTTGGCTCATCAGCCAGCATCGGTGAACATCCAGTTTAGGGGGACAGTTCTAGGGAGGGA
GACTTTTCTGGGAGCAGAGGAAAACGTTGCTGATGGTCCGTGCTGGCATACATCAGTCCT
TTTGAGCTGGGAAGGCAGTAGTCATCTTTACTCGGTGGCAGCTCTCGAGGTATGCACTGT
GAAGAATGAGAAGGGAGAAGCAGAAATTATTCTTGTGAAATATTTGCTGATTGTGCCCCA
CCCTTTGCGCCTGACTTTTCCTAGTTGTCCTGGTGCTAACACAGGAGCTACACCTTGATC
CTCTCCTGGCATGAAAATAAAACATTGGGGGTTTTGGGTTTTTTTTTTTTAATTGTCGTT
CCATTGCCCACGTCCCTCATGTCGTCTTTCCCTTGGCTGCTGCCTCCTCTGGGTCACACT
GCTTCTTATCCTGAACACTTGACACCTTGAGGGTAGAATTTAGCATTTGGTTTTTACCTC
TTAGAATACGCTGTTTGGTATGTGAGGGTTTCAGTACAAATGCTGCTGTCTATTTCTGTG
CACTTAACAATGGAACCCAAACAGAAGAGAATAAAGCCTGGATACCAAAATTGGGAGAGA
AAATGCGTCCATGTGGACCAAACATTGTTTTTTTGTTTCATTTTTTTCTTTTCCTTTCTT
TTTTCATCTTAATCTATACCAGTGGCACTTAACCAAAAGATACACTGACATAGCCATGTA
CTGTGTTTGGGACAGATACAGTCTCCTTGACCTATAATAAAACCAGTAGGATTTCCTTTT
ACATTTTCCTTCATTCATTGGTATATAAAAGATAAATTCCACTTCGGCTTAGCCTGTTTT
AAAACTATGGTAGCTAACTGCTATTTGTTCATGTTGTTTCCTAGAAAAAAAAAAAAAAAT
TGTTTTTCCTTTGAGAATAACTAGGATCTGCATGTGGAGCAAGAATTGTTACTTGTCCTG
ACCTTTCTTCAGCTCTACAGAGAAGCATCTGTGCTTTTATACTTGCCATGGATGTAACCT
AAAAAGTTTTGGCGTATTTAGGTCAGTCTAGCAGAACTTTTTTTCATTTAAATGGAGTTG
AATAATGGAGATTTTGTGTCTGGGAAATTCCTGAGATCACTGAAAAAGTAACAAACTCTT
CCTTGTCTCTGATAGGTAAAATTCTTCTAAGCATTTTTCTCAATCTTTAAAATTTACTGC
CAGTTGTGAGTGGCTTTTTAATTAACTTGACTTTCACTGCATTTCACTCTGCCCATTTTC
AGGGGGGAGTCAGATTGGCAACATTTGAGGAGACTGTATTTGTCTACTTTGTGTGGCTGT
TTTGAGGGACTGTCCCATCAGTGAACATACTGCATGGCCTTGGAGAGAGACTCTGGGCTC
TCGGCTCAGATGTGTTCATCAAATACTCCTCTCAGAGCTCTTGTGGGTGTAAGTGACATG
ATGTGGCCAAAAATCCAAACTGTGCAGTTGCGTTGTGACAAACATGCAATGTGCTGTAAA
AACTCAATACAATTTAAATAAAATCTCTATATTAGTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGCTCATCAGCCAGCATCGGTGAACATCCAGTTTAGGGGGACAGTTCTAGGGAGGGA
GACTTTTCTGGGAGCAGAGGAAAACGTTGCTGATGGTCCGTGCTGGCATACATCAGTCCT
TTTGAGCTGGGAAGGCAGTAGTCATCTTTACTCGGTGGCAGCTCTCGAGGTATGCACTGT
GAAGAATGAGAAGGGAGAAGCAGAAATTATTCTTGTGAAATATTTGCTGATTGTGCCCCA
CCCTTTGCGCCTGACTTTTCCTAGTTGTCCTGGTGCTAACACAGGAGCTACACCTTGATC
CTCTCCTGGCATGAAAATAAAACATTGGGGGTTTTGGGTTTTTTTTTTTTAATTGTCGTT
CCATTGCCCACGTCCCTCATGTCGTCTTTCCCTTGGCTGCTGCCTCCTCTGGGTCACACT
GCTTCTTATCCTGAACACTTGACACCTTGAGGGTAGAATTTAGCATTTGGTTTTTACCTC
TTAGAATACGCTGTTTGGTATGTGAGGGTTTCAGTACAAATGCTGCTGTCTATTTCTGTG
CACTTAACAATGGAACCCAAACAGAAGAGAATAAAGCCTGGATACCAAAATTGGGAGAGA
AAATGCGTCCATGTGGACCAAACATTGTTTTTTTGTTTCATTTTTTTCTTTTCCTTTCTT
TTTTCATCTTAATCTATACCAGTGGCACTTAACCAAAAGATACACTGACATAGCCATGTA
CTGTGTTTGGGACAGATACAGTCTCCTTGACCTATAATAAAACCAGTAGGATTTCCTTTT
ACATTTTCCTTCATTCATTGGTATATAAAAGATAAATTCCACTTCGGCTTAGCCTGTTTT
AAAACTATGGTAGCTAACTGCTATTTGTTCATGTTGTTTCCTAGAAAAAAAAAAAAAAAT
TGTTTTTCCTTTGAGAATAACTAGGATCTGCATGTGGAGCAAGAATTGTTACTTGTCCTG
ACCTTTCTTCAGCTCTACAGAGAAGCATCTGTGCTTTTATACTTGCCATGGATGTAACCT
AAAAAGTTTTGGCGTATTTAGGTCAGTCTAGCAGAACTTTTTTTCATTTAAATGGAGTTG
AATAATGGAGATTTTGTGTCTGGGAAATTCCTGAGATCACTGAAAAAGTAACAAACTCTT
CCTTGTCTCTGATAGGTAAAATTCTTCTAAGCATTTTTCTCAATCTTTAAAATTTACTGC
CAGTTGTGAGTGGCTTTTTAATTAACTTGACTTTCACTGCATTTCACTCTGCCCATTTTC
AGGGGGGAGTCAGATTGGCAACATTTGAGGAGACTGTATTTGTCTACTTTGTGTGGCTGT
TTTGAGGGACTGTCCCATCAGTGAACATACTGCATGGCCTTGGAGAGAGACTCTGGGCTC
TCGGCTCAGATGTGTTCATCAAATACTCCTCTCAGAGCTCTTGTGGGTGTAAGTGACATG
ATGTGGCCAAAAATCCAAACTGTGCAGTTGCGTTGTGACAAACATGCAATGTGCTGTAAA
AACTCAATACAATTTAAATAAAATCTCTATATTAGTAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1078-1232, gnl|bosTau2|chr8 (36223486-36223638)
               

               
               1078-1232, gnl|Mm7|chr11 (87685758-87685916)
               


               
               1312-1536, gnl|bosTau2|chr8 (36223988-36224218)
               

               
               1312-1536, gnl|Hg17|chr17 (53922138-53921897)
               

               
               1312-1536, gnl|Mm7|chr11 (87685989-87686205)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1078-1232, gnl|bosTau2|chr8 (36223486-36223638)
               

               
               1078-1232, gnl|Mm7|chr11 (87685758-87685916)
               


               
               1312-1536, gnl|bosTau2|chr8 (36223988-36224218)
               

               
               1312-1536, gnl|Hg17|chr17 (53922138-53921897)
               

               
               1312-1536, gnl|Mm7|chr11 (87685989-87686205)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	1078-1232, gnl\|bosTau2\|chr8 (36223486-36223638)
	1078-1232, gnl\|Mm7\|chr11 (87685758-87685916)

	1312-1536, gnl\|bosTau2\|chr8 (36223988-36224218)
	1312-1536, gnl\|Hg17\|chr17 (53922138-53921897)
	1312-1536, gnl\|Mm7\|chr11 (87685989-87686205)

	amn (0.417711)
	tra (0.246184)
	tes (0.207814)
	aor (0.195274)
	sin (0.174948)
	eye (0.170503)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	cli (0.152812)
	lun (0.150489)
	spl (0.143184)
	ova (0.129132)
	thg (0.126791)
	bla (0.124347)
	clu (0.119646)
	ebs (0.118301)
	ecc (0.115035)
	jej (0.0989218)