Non-Coding RNA Search

Ss1.1-Mixg-0007c12.3

Sequence:


               
               GCTCTGGGAACAAAGGTTTTCAGGGTGGGAGGTTGAAACGGGATTTTCTAGGGCTTCTGA
GATGAGCCATGGATGCTGGGGACAAGTGGGCCTGCAGGCCAGTGCAGGCTGGCCTGGCCC
CACCCAGCCTGGGTCCTGAAGTGGGTTTTCTCTTTGTCAAAAAGTGGGGGGTGGGGCACT
TTTCTGATCTGCACAAAGTCATTGTATGGCCAGAGCCCTGCGACTCAAGTGTGATCCATG
GGAGCTCATTAGAAATGCAGAATCCCAGGCCCACCCCAGATCTGCAGAATCAGAGCCTGC
ATTTCAAAAGATTCCAGGTGATTCCTACAAGCACTTTACTGTGTGAGAAGCAGGGGCCTA
GGGTGACCCTGGGGGGTGCCCTTGGAGTGGAGGGTGAAGGGTCTCAGCTCCTCCCTGCAC
CGTCAGGGGTCCGAGTCTGTGCTCATCTCCCCCTCCTAAAACCAGTCCCCAGAGACCCTG
GACCTCTTAGATCTTTTCAGAGTCTGCGTGGCACTCCCGGTGAAGGGACAGCCACCAGGA
GGTGAGGGCTGGATTTGCCTTCTGGAACCCTGCCTTTCTGGGTAACCTCTGCATGCCAAG
CAGCTGCTTCCCCGGGTCCTCCCCACAGGCCCTTTGAAGGGGTCGCTTTTGGAAGCTGCT
TCCTGCTCTGCTTGGAGAGTTTCCCTTTCCCTGCTGGGAAAGCTTGGGCAGTCAGAAAAA
CTCCCAATCAAAGCCCACTGTGTAAGTGAGCCCTTAGCTTCAGTCTGCAATAAAGAACGC
GTTGGTTTCATCTGCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTGGGAACAAAGGTTTTCAGGGTGGGAGGTTGAAACGGGATTTTCTAGGGCTTCTGA
GATGAGCCATGGATGCTGGGGACAAGTGGGCCTGCAGGCCAGTGCAGGCTGGCCTGGCCC
CACCCAGCCTGGGTCCTGAAGTGGGTTTTCTCTTTGTCAAAAAGTGGGGGGTGGGGCACT
TTTCTGATCTGCACAAAGTCATTGTATGGCCAGAGCCCTGCGACTCAAGTGTGATCCATG
GGAGCTCATTAGAAATGCAGAATCCCAGGCCCACCCCAGATCTGCAGAATCAGAGCCTGC
ATTTCAAAAGATTCCAGGTGATTCCTACAAGCACTTTACTGTGTGAGAAGCAGGGGCCTA
GGGTGACCCTGGGGGGTGCCCTTGGAGTGGAGGGTGAAGGGTCTCAGCTCCTCCCTGCAC
CGTCAGGGGTCCGAGTCTGTGCTCATCTCCCCCTCCTAAAACCAGTCCCCAGAGACCCTG
GACCTCTTAGATCTTTTCAGAGTCTGCGTGGCACTCCCGGTGAAGGGACAGCCACCAGGA
GGTGAGGGCTGGATTTGCCTTCTGGAACCCTGCCTTTCTGGGTAACCTCTGCATGCCAAG
CAGCTGCTTCCCCGGGTCCTCCCCACAGGCCCTTTGAAGGGGTCGCTTTTGGAAGCTGCT
TCCTGCTCTGCTTGGAGAGTTTCCCTTTCCCTGCTGGGAAAGCTTGGGCAGTCAGAAAAA
CTCCCAATCAAAGCCCACTGTGTAAGTGAGCCCTTAGCTTCAGTCTGCAATAAAGAACGC
GTTGGTTTCATCTGCAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               39-154, - strand, RNAz p=0.774233
               

               
               233-363, - strand, RNAz p=0.971988
               

               
               439-663, - strand, RNAz p=0.993826

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-154, - strand, RNAz p=0.774233
               

               
               233-363, - strand, RNAz p=0.971988
               

               
               439-663, - strand, RNAz p=0.993826

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-795, gnl|bosTau2|chr28 (19298299-19299083)
               

               
               1-795, gnl|Hg17|chr10 (71729556-71728732)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-795, gnl|bosTau2|chr28 (19298299-19299083)
               

               
               1-795, gnl|Hg17|chr10 (71729556-71728732)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	39-154, - strand, RNAz p=0.774233
	233-363, - strand, RNAz p=0.971988
	439-663, - strand, RNAz p=0.993826

	1-795, gnl\|bosTau2\|chr28 (19298299-19299083)
	1-795, gnl\|Hg17\|chr10 (71729556-71728732)