Non-Coding RNA Search

Ss1.1-Mixg-0007d04.5

Sequence:


               
               CACCGGTGTAGTGAGCCCATGTTTACGATCGTCTACCCCAAGCTCTTTCCCCTGAGAGAG
ACACCAATGGCAGGGCTGCACCAGGGGAGGGCAGCTGTTAGTTTTGTGGCTTATTGCTGC
TCCACCCAGTGCCTGCAGACTTTTGACCTACTGAGCTGATAGACACTCAGGAGCCTCAGG
AGTGTTGCCAGCTTGACACTGCAGTCTCCTGCAAGTCGCACATTGTGCAGCAGCGGGACA
AAAGAGCCCAGCCAGACCAACAGATCCTATCATCCTGCCCTGTCCTATCCAGCTCCAGGA
TTGCAGAACCTGGAAATATCTCGATAGAGCTTCAGAGCCGAAATGCCTTCACCCTGCCCC
CACGTCGGAATATATCCTCCCTCAGATTAAAAAAAATTTGTCTTCTGTGTTTTTCTTTCT
CTGGAAGTGTGTCTTGCAGACAGAGTATTTACTTTGATACACCTGCCCAAATCTAATGTA
GAGGAAGCTTCAGTTCCCTGAAAAACTCTGTTCATAATGTAACTAAATCAGTTTTTGGAC
ACACATACCTTCATTGCTACCTGTCATCTTCTCCTTTCTCTTTCTGTCCCCAGAGAATTA
TTTCCCCCAGAGGTTATTCCTCATGTTTTTAATGAATTTCAGCAAACCCTACAAACCTCA
GTAGTATTGAAGAGCAGTGGAGGGTGGACTAGGTAAGGACAGAGTGCCTGAGTTGGCAGC
CAGTTAGATGACAGCAGAGGCTTCACAAGGGTGCCCTGGAAAGTTACAACCTTGTTTGTA
AACCTTTGCAACATATTAAGAGACTTTTATGAGGGGTTTTAAAAATAAAAATGTAGATTA
TAGATGAAATAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCGGTGTAGTGAGCCCATGTTTACGATCGTCTACCCCAAGCTCTTTCCCCTGAGAGAG
ACACCAATGGCAGGGCTGCACCAGGGGAGGGCAGCTGTTAGTTTTGTGGCTTATTGCTGC
TCCACCCAGTGCCTGCAGACTTTTGACCTACTGAGCTGATAGACACTCAGGAGCCTCAGG
AGTGTTGCCAGCTTGACACTGCAGTCTCCTGCAAGTCGCACATTGTGCAGCAGCGGGACA
AAAGAGCCCAGCCAGACCAACAGATCCTATCATCCTGCCCTGTCCTATCCAGCTCCAGGA
TTGCAGAACCTGGAAATATCTCGATAGAGCTTCAGAGCCGAAATGCCTTCACCCTGCCCC
CACGTCGGAATATATCCTCCCTCAGATTAAAAAAAATTTGTCTTCTGTGTTTTTCTTTCT
CTGGAAGTGTGTCTTGCAGACAGAGTATTTACTTTGATACACCTGCCCAAATCTAATGTA
GAGGAAGCTTCAGTTCCCTGAAAAACTCTGTTCATAATGTAACTAAATCAGTTTTTGGAC
ACACATACCTTCATTGCTACCTGTCATCTTCTCCTTTCTCTTTCTGTCCCCAGAGAATTA
TTTCCCCCAGAGGTTATTCCTCATGTTTTTAATGAATTTCAGCAAACCCTACAAACCTCA
GTAGTATTGAAGAGCAGTGGAGGGTGGACTAGGTAAGGACAGAGTGCCTGAGTTGGCAGC
CAGTTAGATGACAGCAGAGGCTTCACAAGGGTGCCCTGGAAAGTTACAACCTTGTTTGTA
AACCTTTGCAACATATTAAGAGACTTTTATGAGGGGTTTTAAAAATAAAAATGTAGATTA
TAGATGAAATAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               86-671, gnl|bosTau2|chr21 (4292520-4293094)
               

               
               86-671, gnl|Hg17|chr15 (97743757-97744328)
               

               
               86-671, gnl|Mm7|chr7 (63371158-63370575)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-671, gnl|bosTau2|chr21 (4292520-4293094)
               

               
               86-671, gnl|Hg17|chr15 (97743757-97744328)
               

               
               86-671, gnl|Mm7|chr7 (63371158-63370575)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               isp (0.150376)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

	86-671, gnl\|bosTau2\|chr21 (4292520-4293094)
	86-671, gnl\|Hg17\|chr15 (97743757-97744328)
	86-671, gnl\|Mm7\|chr7 (63371158-63370575)